Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1661 ATGACACCCATTTTGAGTTATGTTGTGTCCAAATGGCAAGCGTTGTCCACTTCTGATCATGCCTCTGTTGTTTCCATTAACTTGTTTGTGGCACTTCTCTGTGCTTGTATTGTGATTGGTCATCTTCTTGAGGAGACCCGGTGGATGAACGAGTCCATCACTGCACTGTTGATTGGTCTGTTTACTGGAGTCATCATTTTACTGGTCAGTGGTGGGAAAAGTTCGCATCTATTGCTCTTTAGCGAAGACACATTCTTCATTTATCTTCTGCCACCGATTATATTCAACGCTGGGTTTCAGGTGAAAAAGAAGCAGTTCTTTGTTAACTTTATGACCATTATGCTGTTTGGTGCAATTGGTACATTAGTCTCTTGTTTGATCATCTCGTTAGGAGCTTTTCAGTTCTTTAAGAAAATGGATGTTGGATCACTGGATATTGCTGATGTTTTAGCAATTGGAGCTATATTTGCCGCAACAGATTCTGTATGCACATTGCAGATATTAAATCAGGATGAAACCCCTCTACTTTACAGTCTAGTATTTGGGGAAGGTGTAGTAAATGATGCCACATCTGTAGTGCTTTTCAATGCAATTCAGAGCTTAGATCTCAGTAATGTTGATGCAAGAGTTGCTTTACATTTTATTGGGAGCTTCTTTTATCTATTTTCAACAAGCACTTTACTCGGAGTATTTGTTGGCCTGCTGAGTGCTTATGTAATCAAAAAGTTATATTTTGGCAGGCACTCGACAGATCGTGAGGTTGCTCTTATGATACTCATGGCATATCTTTCATATATGCTGGCTGAATTATTAGATTTGAGTGGCATTCTCACAGTGTTCTTTTGTGGAATTGTAATGTCACATTATACCTGGCATAACGTGACTGAGAGCTCAAGAGTTACCACCAAGCATGCTTTTGCTACCTTATCCTTCATTTCTGAGACGTTTATCTTCGTTTATGTCGGCATGGATGCATTGGACATTGAGAAGTGGAGCTTTGTTAGTGATAGTCCGGGGACATCAGTTGCTGTGAGCGCAATATTATTAGGCCTGGTCATGGTTGGAAGAGCTGCCTTTGTTTTTCCATTATCATTTATATCAAATTTAGCTAAAAAATCGGCAGGCGAGAAAATAACCTTCAGGGAACAAGTTATCATTTGGTGGGCTGGTCTCATGAGAGGTGCTGTTTCTATTGCTCTAGCTTATCATCAGTTCACCCGAGCTGGGCACACTCAACTACGAGGGAATGCAATGATGATCACTAGTACCATAACTGTTGTCCTCTTCAGCACAATGGTGTTTGGATTATTGACCAAGCCTCTTATTAACTGTTTGCTACCTCAACTAAAACACACCACCAGCATGCTATCGGACCCTGCGACTCCAAAATCATTCTCGGTTCCACTACTTGGAAGCGCACAGGAGTCGGAGCTGGATCTTGACAGTCTCCACGTTCCTCGTCCAAGCAGTATACGTGCACTCCTTGCAACTCCTACGCACACCGTTCATCGCTACTGGCGAAAGTTCGATGATGCTGTCATGCGTCCAATGTTTGGGGGCCGGGGTTTTGTTCCCTTTGTTCCAGGATCCCCAACCGAAAGGGGTGGACACTGA 1614 42.63 MTPILSYVVSKWQALSTSDHASVVSINLFVALLCACIVIGHLLEETRWMNESITALLIGLFTGVIILLVSGGKSSHLLLFSEDTFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLVSCLIISLGAFQFFKKMDVGSLDIADVLAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLSNVDARVALHFIGSFFYLFSTSTLLGVFVGLLSAYVIKKLYFGRHSTDREVALMILMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFISETFIFVYVGMDALDIEKWSFVSDSPGTSVAVSAILLGLVMVGRAAFVFPLSFISNLAKKSAGEKITFREQVIIWWAGLMRGAVSIALAYHQFTRAGHTQLRGNAMMITSTITVVLFSTMVFGLLTKPLINCLLPQLKHTTSMLSDPATPKSFSVPLLGSAQESELDLDSLHVPRPSSIRALLATPTHTVHRYWRKFDDAVMRPMFGGRGFVPFVPGSPTERGGH 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31744965 31749841 + CaPI482276_03g016610.1 Cam03g1661 123927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1661 537 Gene3D - 145 197 - -
Cam03g1661 537 NCBIfam sodium/hydrogen exchanger 3 24 447 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam03g1661 537 PANTHER SODIUM/HYDROGEN EXCHANGER 17 527 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(InterPro)|GO:0015385(PANTHER)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0090333(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Cam03g1661 537 Pfam Sodium/hydrogen exchanger family 32 443 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cam03g1661 537 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam03g1661 537 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam03g1661 537 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam03g1661 537 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1661 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1163 Cam-Chr1:18274111 Cam03g1661 Cam-Chr3:31744965 3.60E-33 dispersed
Cam03g1661 Cam-Chr3:31744965 Cam09g2129 Cam-Chr9:35841769 5.80E-168 dispersed
Cam03g1661 Cam-Chr3:31744965 Cam06g0546 Cam-Chr6:7536890 3.20E-219 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g2388 . 1 407 Antiporters AT5G46110 79.9 3.2e-174 608.2
Cam05g2562 . 51 415 Antiporters AT5G46110 74.0 8.7e-148 520.4
Cam10g0516 . 1 395 Antiporters AT5G54800 73.2 2.1e-159 558.9
Cam05g1627 . 1 395 Antiporters AT5G54800 73.2 3.0e-158 555.1
Cam01g2267 . 46 391 Antiporters AT5G54800 79.2 7.9e-151 530.4
Cam09g1964 . 51 394 Antiporters AT3G01550 64.6 7.5e-122 434.1
Cam01g1427 . 53 417 Antiporters AT3G01550 59.5 1.4e-112 403.3
Cam01g1427 . 1 419 Antiporters AT5G33320 72.4 1.1e-155 546.6
Cam09g1964 . 69 397 Antiporters AT5G33320 61.5 4.2e-110 395.2
Cam01g2267 . 46 388 Antiporters AT1G61800 82.6 8.9e-161 563.5
Cam05g1627 . 1 396 Antiporters AT1G61800 72.6 9.8e-160 560.1
Cam10g0516 . 39 399 Antiporters AT1G61800 77.6 7.1e-158 553.9
Cam05g0285 . 106 405 Antiporters AT1G61800 52.6 2.1e-85 313.2
Cam05g0285 . 48 417 Antiporters AT5G17630 73.9 9.4e-150 526.9
Cam05g1627 . 81 394 Antiporters AT5G17630 53.9 6.4e-90 328.2
Cam01g2267 . 92 389 Antiporters AT5G17630 54.2 3.2e-89 325.9
Cam10g0516 . 89 395 Antiporters AT5G17630 53.5 5.4e-89 325.1
Cam10g0392 . 103 478 Antiporters AT3G13320 79.3 2.1e-163 572.4
Cam02g1103 . 79 457 Antiporters AT3G13320 76.6 1.1e-156 550.1
Cam07g1142 . 149 518 Antiporters AT3G13320 75.7 1.7e-154 542.7
Cam04g0714 . 5 430 Antiporters AT2G38170 72.0 1.2e-164 576.6
Cam10g2167 . 28 438 Antiporters AT2G38170 64.0 2.0e-140 496.1
Cam03g0076 . 32 394 Antiporters AT2G38170 61.9 2.7e-121 432.6
Cam04g0714 . 1 398 Antiporters AT3G51860 72.4 1.7e-152 536.2
Cam10g2167 . 24 414 Antiporters AT3G51860 65.6 5.1e-136 481.5
Cam03g0076 . 32 370 Antiporters AT3G51860 66.3 7.4e-119 424.5
Cam10g0392 . 109 449 Antiporters AT3G51860 51.3 1.5e-82 303.9
Cam02g1103 . 71 424 Antiporters AT3G51860 50.4 1.9e-82 303.5
Cam07g1142 . 155 486 Antiporters AT3G51860 50.1 1.3e-78 290.8
Cam04g0714 . 34 435 Antiporters AT5G01490 62.5 2.2e-136 482.6
Cam10g2167 . 49 441 Antiporters AT5G01490 62.8 2.3e-133 472.6
Cam03g0076 . 26 396 Antiporters AT5G01490 56.9 5.3e-114 408.3
Cam10g0392 . 104 478 Antiporters AT1G55720 75.8 4.8e-152 534.6
Cam02g1103 . 79 453 Antiporters AT1G55720 73.7 1.5e-145 513.1
Cam07g1142 . 149 515 Antiporters AT1G55720 71.4 1.6e-139 493.0
Cam10g0392 . 104 478 Antiporters AT1G55730 80.3 6.4e-165 577.4
Cam02g1103 . 61 453 Antiporters AT1G55730 74.4 2.6e-158 555.4
Cam07g1142 . 149 519 Antiporters AT1G55730 76.3 7.1e-156 547.4
Cam04g0714 . 65 431 Antiporters AT1G55730 51.5 9.8e-97 350.9
Cam03g1661 . 4 534 Antiporters AT5G27150 77.6 1.0e-233 806.2
Cam06g0546 . 22 527 Antiporters AT5G27150 74.8 8.0e-218 753.4
Cam09g2129 . 12 517 Antiporters AT5G27150 60.4 5.8e-168 587.8
Cam09g0630 . 128 560 Antiporters AT5G27150 60.7 5.6e-163 571.2
Cam09g0631 . 67 563 Antiporters AT5G27150 59.9 2.9e-159 558.9
Cam06g0546 . 22 536 Antiporters AT3G06370 71.9 1.1e-209 726.5
Cam03g1661 . 5 533 Antiporters AT3G06370 70.6 8.5e-207 716.8
Cam09g2129 . 5 517 Antiporters AT3G06370 59.3 4.9e-162 568.2
Cam09g0631 . 67 563 Antiporters AT3G06370 60.4 1.8e-156 549.7
Cam09g0630 . 128 562 Antiporters AT3G06370 57.1 4.4e-147 518.5
Cam09g2129 . 1 524 Antiporters AT5G55470 69.5 1.1e-211 733.0
Cam03g1661 . 18 520 Antiporters AT5G55470 60.2 6.1e-170 594.3
Cam06g0546 . 19 514 Antiporters AT5G55470 58.9 8.2e-167 583.9
Cam09g0631 . 67 563 Antiporters AT5G55470 51.5 1.3e-132 470.3
Cam03g1661 . 10 537 Antiporters AT3G05030 78.8 7.0e-238 820.1
Cam06g0546 . 22 527 Antiporters AT3G05030 75.4 1.9e-222 768.8
Cam09g2129 . 12 517 Antiporters AT3G05030 59.6 2.6e-168 589.0
Cam09g0630 . 128 563 Antiporters AT3G05030 60.5 6.1e-165 577.8
Cam09g0631 . 67 563 Antiporters AT3G05030 59.4 1.4e-161 566.6
Cam07g1278 . 102 667 Antiporters AT1G15460 70.4 1.7e-229 792.3
Cam01g0517 . 104 674 Antiporters AT1G15460 69.4 2.0e-227 785.4
Cam08g1768 . 152 696 Antiporters AT1G15460 65.6 3.5e-211 731.5
Cam10g1151 . 102 645 Antiporters AT1G15460 59.2 5.4e-180 627.9
Cam01g1428 . 102 644 Antiporters AT1G15460 57.2 1.1e-175 613.6
Cam10g1151 . 3 709 Antiporters AT3G06450 69.8 7.8e-293 1003.0
Cam01g1428 . 3 683 Antiporters AT3G06450 69.1 2.0e-280 961.8
Cam01g0517 . 11 657 Antiporters AT3G06450 55.6 2.9e-215 745.3
Cam07g1278 . 6 647 Antiporters AT3G06450 56.2 3.8e-215 745.0
Cam08g1768 . 56 691 Antiporters AT3G06450 56.1 6.6e-215 744.2
Cam10g1151 . 1 716 Antiporters AT2G47160 79.1 0.0e+00 1153.3
Cam01g1428 . 1 670 Antiporters AT2G47160 74.5 7.5e-304 1039.6
Cam07g1278 . 1 647 Antiporters AT2G47160 56.5 2.9e-215 745.3
Cam08g1768 . 57 691 Antiporters AT2G47160 57.2 8.5e-215 743.8
Cam01g0517 . 12 657 Antiporters AT2G47160 56.7 5.5e-214 741.1
Cam07g1278 . 1 667 Antiporters AT1G74810 69.6 2.1e-276 948.3
Cam01g0517 . 11 678 Antiporters AT1G74810 69.2 2.4e-272 934.9
Cam08g1768 . 57 699 Antiporters AT1G74810 66.3 1.4e-251 865.9
Cam10g1151 . 7 645 Antiporters AT1G74810 59.8 4.1e-219 758.1
Cam01g1428 . 7 644 Antiporters AT1G74810 58.2 2.5e-216 748.8
Cam10g1151 . 1 708 Antiporters AT3G62270 81.5 0.0e+00 1156.7
Cam01g1428 . 1 694 Antiporters AT3G62270 76.0 7.5e-309 1056.2
Cam08g1768 . 57 691 Antiporters AT3G62270 58.8 7.7e-221 763.8
Cam07g1278 . 1 647 Antiporters AT3G62270 58.0 1.0e-217 753.4
Cam01g0517 . 12 657 Antiporters AT3G62270 58.6 6.7e-217 750.7
Cam08g1768 . 57 700 Antiporters AT4G32510 68.2 1.2e-260 896.0
Cam07g1278 . 1 664 Antiporters AT4G32510 65.4 8.3e-257 883.2
Cam01g0517 . 12 674 Antiporters AT4G32510 65.6 6.0e-255 877.1
Cam10g1151 . 1 645 Antiporters AT4G32510 55.1 1.0e-206 716.8
Cam01g1428 . 1 650 Antiporters AT4G32510 54.2 6.7e-206 714.1
Cam08g1768 . 57 698 Antiporters AT5G25430 70.1 3.8e-262 901.0
Cam07g1278 . 2 664 Antiporters AT5G25430 65.2 1.3e-246 849.4
Cam01g0517 . 10 674 Antiporters AT5G25430 64.5 2.8e-244 841.6
Cam10g1151 . 7 645 Antiporters AT5G25430 56.2 6.7e-206 714.1
Cam01g1428 . 7 656 Antiporters AT5G25430 54.8 4.0e-203 704.9
Cam01g0701 . 27 1144 Antiporters AT2G01980 66.3 0.0e+00 1390.6
Cam01g0701 . 20 738 Antiporters AT1G14660 66.1 1.5e-272 935.6
Cam08g2172 . 51 584 Antiporters AT5G11800 84.0 2.2e-240 828.6
Cam03g1585 . 19 587 Antiporters AT5G11800 75.4 1.4e-223 772.7
Cam05g0900 . 57 563 Antiporters AT5G11800 69.9 2.1e-187 652.5
Cam05g0900 . 31 565 Antiporters AT5G51710 82.6 3.7e-242 834.3
Cam08g2172 . 49 558 Antiporters AT5G51710 70.0 3.1e-188 655.2
Cam03g1585 . 51 560 Antiporters AT5G51710 68.8 6.7e-183 637.5
Cam08g2172 . 42 584 Antiporters AT2G19600 81.0 4.3e-233 804.3
Cam03g1585 . 39 584 Antiporters AT2G19600 80.7 1.1e-228 789.6
Cam05g0900 . 32 563 Antiporters AT2G19600 67.3 4.5e-182 634.8
Cam05g1188 . 148 563 Antiporters AT1G49810 76.6 1.8e-177 619.0
Cam05g1188 . 1 581 Antiporters AT3G19490 76.7 1.5e-246 849.0
Cam02g2400 . 99 569 Antiporters AT5G12860 91.3 4.8e-250 860.5
Cam10g0917 . 83 577 Antiporters AT5G64280 67.1 2.5e-195 678.7
Cam10g0917 . 1 577 Antiporters AT5G64290 70.3 7.8e-216 746.9
Cam07g0244 . 3 379 Antiporters AT4G28390 81.2 3.8e-174 607.8
Cam08g2078 . 441 827 Antiporters AT4G28390 73.5 3.2e-157 551.6
Cam04g1190 . 5 307 Antiporters AT4G28390 63.2 4.3e-109 391.7
Cam08g2078 . 439 828 Antiporters AT3G08580 78.1 2.8e-169 591.7
Cam07g0244 . 1 378 Antiporters AT3G08580 71.9 1.9e-149 525.8
Cam04g1190 . 7 307 Antiporters AT3G08580 57.6 4.9e-97 351.7
Cam08g2078 . 439 828 Antiporters AT5G13490 81.7 1.1e-179 626.3
Cam07g0244 . 8 378 Antiporters AT5G13490 79.6 3.4e-162 568.2
Cam04g1190 . 8 307 Antiporters AT5G13490 61.5 5.9e-106 381.3
Cam04g1190 . 4 301 Antiporters AT5G17400 80.2 2.1e-138 488.8
Cam07g0244 . 79 365 Antiporters AT5G17400 64.5 1.2e-109 393.3
Cam08g2078 . 528 819 Antiporters AT5G17400 63.0 5.0e-108 387.9
Cam03g1701 . 4 542 Antiporters AT1G08960 65.8 6.9e-185 644.0
Cam10g1563 . 41 565 Antiporters AT5G17850 52.4 3.7e-149 525.4
Cam10g1077 . 39 575 Antiporters AT2G47600 71.0 5.9e-213 737.3
Cam07g1258 . 1 300 Antiporters AT1G79900 68.4 1.7e-116 416.0
Cam09g0207 . 1 305 Antiporters AT1G79900 68.0 3.7e-116 414.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000259 5 3 4 6 6 5 5 5 4 4 4 4 5 5 5 5 5 9 6 4 4 5 4 6 5 6 6 10 5 5 155