Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1702 ATGGATCAGCAAGGGCATGGCCAGCCTCCATCCATGGGAGCAGTTGGCAGTGGAGGTCAGATAGCATATGGTAGCAACCTGTACCATCCCAACCAAATGACTGTAGGCCCGACTTCCGGATCTGTCGTTACATCAGTCGGAGGTATCCAGTCTACAAGTCAACCTGGTGGAGCTCAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAACAGCTTCAGCAGCAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCGTTAGCAAGAATCAAGAAGATCATGAAGGCTGACGAGGACGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCATACTGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAGGATCTGAAAGACGAAGTACTCACATCGATTCCAAGAGGATCAATGACAGTTGGGGGGCCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAAGTTGGGGCACCTGGAATGATCATGGGTAAGCCTGTGATGGACCCAGCTATGTATGCTCCACAATCACACCCTTACATGCCTCCACAAATGTGGCAGCACGCACAAGATCAAACCCCTCCTGATCAATAG 783 47.51 MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMTVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMPPQMWQHAQDQTPPDQ 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32181447 32182229 + CaPI482276_03g017020.1 Cam03g1702 123968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1702 260 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982(InterPro)
Cam03g1702 260 MobiDBLite consensus disorder prediction 237 260 - -
Cam03g1702 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 77 195 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cam03g1702 260 Pfam Core histone H2A/H2B/H3/H4 64 166 IPR007125 GO:0003677(InterPro)
Cam03g1702 260 FunFam Nuclear transcription factor Y subunit gamma 68 181 - -
Cam03g1702 260 SUPERFAMILY Histone-fold 69 175 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1702 Cam-Chr3:32181447 Cam09g1394 Cam-Chr9:20215650 9.90E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51713 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1702 K08066 - csv:101209664 454.136