Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1702 ATGGATCAGCAAGGGCATGGCCAGCCTCCATCCATGGGAGCAGTTGGCAGTGGAGGTCAGATAGCATATGGTAGCAACCTGTACCATCCCAACCAAATGACTGTAGGCCCGACTTCCGGATCTGTCGTTACATCAGTCGGAGGTATCCAGTCTACAAGTCAACCTGGTGGAGCTCAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAACAGCTTCAGCAGCAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCGTTAGCAAGAATCAAGAAGATCATGAAGGCTGACGAGGACGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCATACTGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAGGATCTGAAAGACGAAGTACTCACATCGATTCCAAGAGGATCAATGACAGTTGGGGGGCCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAAGTTGGGGCACCTGGAATGATCATGGGTAAGCCTGTGATGGACCCAGCTATGTATGCTCCACAATCACACCCTTACATGCCTCCACAAATGTGGCAGCACGCACAAGATCAAACCCCTCCTGATCAATAG 783 47.51 MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMTVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMPPQMWQHAQDQTPPDQ 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32181447 32182229 + CaPI482276_03g017020.1 Cam03g1702 123968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1702 260 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982(InterPro)
Cam03g1702 260 MobiDBLite consensus disorder prediction 237 260 - -
Cam03g1702 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 77 195 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cam03g1702 260 Pfam Core histone H2A/H2B/H3/H4 64 166 IPR007125 GO:0003677(InterPro)
Cam03g1702 260 FunFam Nuclear transcription factor Y subunit gamma 68 181 - -
Cam03g1702 260 SUPERFAMILY Histone-fold 69 175 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1702 K08066 - - csv:101209664 454.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1702 Cam-Chr3:32181447 Cam09g1394 Cam-Chr9:20215650 9.90E-65 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam06g1935 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 8.9e-89 323.6
Cam09g1394 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.4 2.1e-53 206.1
Cam03g1702 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.3e-52 203.4
Cam03g1702 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 2.2e-55 212.6
Cam09g1394 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.2e-48 190.3
Cam06g1935 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.3e-43 171.0
Cam03g1702 . 23 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.0 2.3e-62 235.7
Cam09g1394 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.8e-52 202.2
Cam06g1935 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.8e-51 199.5
Cam06g1935 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.6e-38 155.2
Cam06g1935 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 7.3e-81 297.4
Cam09g1394 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.9e-49 193.0
Cam03g1702 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 5.6e-49 191.4
Cam09g1394 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 2.6e-65 245.4
Cam03g1702 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 3.1e-50 195.3
Cam06g1935 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.0e-50 194.9
Cam11g1343 . 1 282 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.3 4.9e-60 228.4
Cam08g1459 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.5 8.8e-38 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51713 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Cam TF