Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1733 ATGTTAAGAGTTTCTTTAGCCATTCATCTTTTTACGTTGATCTTTATTCCCGCATTACAAGTTTCCTGCATTGATGTTATCTACCCGAATGAGCAGAATAATGTTAGACAATCCATGATTTCTCAGATTTGTGCAGATATCGAAGATCGAAATTCATGCATTTCGAACATACAACTTGAGATGGGAAGAAGTGTGAACTCAAGTCCAAGTTCTGTCTTGAGTGCTGCAATTAGAGCAACCCTTAATGAAGCTAGACGAGCCATAGAGTCTATAACAAAGTTCAGCACATTCTCGTTTAGCTACCGTGAAGAAATGGCAATCGAGGACTGCAAGGAGCTTCTTGATTTCTCTGTTTCAGAGCTTGCCTGGTCATTAGCTGAGATGAAAAGGATTCGTGCAGGCAAAAACGAAGCTCCCGACGAAGGGAATCTAAAAGCATGGCTGAGCGCTGCTCTCAGCAACCAAGACACATGCCTTGAAGGCTTTGAAGGCACAGACAGGCATATTGTAGGTTTCATTAGAGGTAGTTTGAAGCAAGTTACACTGCTTATTAGCAATGTCTTGGCATTGTACACTCAATTACACAGCTTACCATTTCAACCCCCGCGGAATGAAACAATAGAGAAAACCAAAAATTCGGAGTTTCCAGATTGGATGATGGATAGCGAGCACAAGCTTGTGAAATCTCATCCACGTAACGTCCATGTTGATGCAGTCGTGGCTTTGGATGGAAGCGGAGATTTCCGTTCTATCACAGAAGCTGTAAATGAAACTCCAAATTATAGCAATAGAAGGTACATCATATATGTGAAGAAGGGAGTCTACAAAGAAAATATCGACATGAAGCGGAAGAAAACCAACATAATGTTTATTGGAGACGGTATTGGAGAAACAATAGTGACGGGAAATCGCAATTTTCTGCAGGGATGGACTACTTTCAGAACTGCAACTGTTGCTGTCTCTGGGAAGGGATTCATAGCAAGAGACATGACATTTCGCAACACGGCTGGACCAGAAAACCATCAAGCAGTGGCACTCCGAGTTGACTCTGATCAATCAGCCTTCTTTCGGTGCAGCTTCGAAGGCCATCAAGACACGCTCTACGTCCACTCTCTACGCCAATTTTACAGGGAATGCAACATATATGGCACCATAGACTACATCTTTGGCAACGGGGCAGCAGTATTCCAAAAATGCAACATCTACACTAGAGTTCCGCTCCCACTCCAGAAGGTCACGATCACGGCACAAGGTCGAAAGTCCCCGCACCAGAGTACGGGGTTTTCAATCCAAGACAGCTTTATTTATGCAACTCAGCCAACGTATCTTGGAAGACCATGGAAGTTATATTCAAGGACTGTCTTCTTGAACACTTACATGAGTGGTTTGGTACAACCTAGAGGATGGCTTGAGTGGTATGGCAATTTTGCTTTAGGCACATTGTGGTATGGAGAATATAAAAACTATGGACCTGGTGCATCCCTTTCGGGTCGGGTCAAATGGCCTGGGTACCACGATATCCGTGACCCTGCCATGGCTAGGTTCTTCACCTCTGAGCACTTCATTGACGGTCGATCATGGTTGCCAAAGACGGGTATAAAGTTCACATTGGGATTGAGTAATTAA 1626 43.85 MLRVSLAIHLFTLIFIPALQVSCIDVIYPNEQNNVRQSMISQICADIEDRNSCISNIQLEMGRSVNSSPSSVLSAAIRATLNEARRAIESITKFSTFSFSYREEMAIEDCKELLDFSVSELAWSLAEMKRIRAGKNEAPDEGNLKAWLSAALSNQDTCLEGFEGTDRHIVGFIRGSLKQVTLLISNVLALYTQLHSLPFQPPRNETIEKTKNSEFPDWMMDSEHKLVKSHPRNVHVDAVVALDGSGDFRSITEAVNETPNYSNRRYIIYVKKGVYKENIDMKRKKTNIMFIGDGIGETIVTGNRNFLQGWTTFRTATVAVSGKGFIARDMTFRNTAGPENHQAVALRVDSDQSAFFRCSFEGHQDTLYVHSLRQFYRECNIYGTIDYIFGNGAAVFQKCNIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSFIYATQPTYLGRPWKLYSRTVFLNTYMSGLVQPRGWLEWYGNFALGTLWYGEYKNYGPGASLSGRVKWPGYHDIRDPAMARFFTSEHFIDGRSWLPKTGIKFTLGLSN 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32422828 32424589 + CaPI482276_03g017330.1 Cam03g1733 123999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1733 541 CDD PMEI-like_3 43 196 - -
Cam03g1733 541 Pfam Pectinesterase 237 524 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam03g1733 541 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 195 IPR035513 -
Cam03g1733 541 Gene3D - 231 539 IPR012334 -
Cam03g1733 541 PANTHER PECTINESTERASE 10 530 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam03g1733 541 ProSitePatterns Pectinesterase signature 2. 381 390 IPR033131 -
Cam03g1733 541 SMART PMEI_2 35 190 IPR006501 GO:0004857(InterPro)
Cam03g1733 541 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 195 IPR035513 -
Cam03g1733 541 SUPERFAMILY Pectin lyase-like 236 538 IPR011050 -
Cam03g1733 541 NCBIfam pectinesterase inhibitor domain 7 195 IPR006501 GO:0004857(InterPro)
Cam03g1733 541 FunFam Pectinesterase 231 539 - -
Cam03g1733 541 Pfam Plant invertase/pectin methylesterase inhibitor 39 190 IPR006501 GO:0004857(InterPro)
Cam03g1733 541 ProSitePatterns Pectinesterase signature 1. 262 281 IPR018040 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0325 Cam-Chr3:4442261 Cam03g1733 Cam-Chr3:32422828 4.30E-14 dispersed
Cam03g1733 Cam-Chr3:32422828 Cam10g0006 Cam-Chr10:1694674 1.40E-132 dispersed
Cam03g1733 Cam-Chr3:32422828 Cam03g1734 Cam-Chr3:32426683 2.90E-103 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1733 K01051 - csv:101202977 1054.66