Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1734 ATGGGTTATAGAGATGATGATTCTCAGAACAAGAAAAGATACGCCATCATCGGTGTCTCGTCCATGTTACTAGTGGCGATGGTGGTGGCGGTGACGGTTGGCGTTAACCTAAACCAAGACGAAACGAGCGAACCAGCTACCGGAAACAAAGCCCATGAAATATCTGCTTCAGTGAAAGCCATTAAAGCCATTTGTCAACCTACTGATTATAAACAAGAATGTGTTGCTAGTCTCAAGGCTGCTGGCAACAACTCTTCAGACCCAAAGGAATTGGTTCAAGCTGGCTTCAAGGCTGCCATGAAGTTGATCCAAGCTGCTGCTAATAAATCTGTCACCTTGAAAGAGCTTGAGAAAGACCCTAGAACCTCCAAGGCCCTTGCTGGTTGTAAAGAGCTCATGGATTTTGCTGTTGACGAGCTTAAATACTCGATGAACAAGCTCGGCGAGTTTGATATTAGTAAACTCGATGAGATGTTGATCGATATTAAGATCTGGCTCAGTGCTACCATTACTTATCAGGAAACTTGCTTGGATGGGTTCGAGAACACAACCGGAAATGCGGCAGAGAAGATGAAGAAGGCATTGAAGACATCAATGCGGTTGAGCAGCAATGGGTTGGCCATGGTGTCGCAAATTTCGTCCATGTTGACAGAGTTGCAGATTCCAGGGATCAGCCGAAGGCGACTTCTCGAGATTCCGGTTCTTGGGCACGATGATTACCCCGACTGGGCGAACCCTGGGATGCGACGACTCCTAGCTGCCGGGACGAAAGTGAAGCCAAACGTTGTGGTGGCCAAGGATGGAAGTGGTCAGTTCAGGACCATTCAAGAGGCTCTTGACAAAGTTCCAAAGAGGAAGAACAATGCAACCTTTGTGATTCATATCAAGGCGGGAGTGTACAAGGAATATCTCATCATCAAAAAATCTCTCACCCATTTGATGCTCATTGGTGATGGCCCCAAAAAGACCATTATCACTGGAAGTAAAAACTTCATTGATGGCACACCCACCTTCAAAACTGCAACAGTTGCTGTGACAGCAGAACACTTTATGGCAAGAGATATCGGGTTCGAAAACACAGCAGGGCCACATAAGCACCAAGCAGTTGCGCTACGAGTCCAAGCCGACAAAGCCGTATTCTACAACTGCGAAATGCATGGCTACCAAGACACTCTCTACGTCCACACCATGCGTCAGTTCTACCGCGATTGCACCATCTCCGGCACCATCGACTTCATCTTCGGTGATGCAGCTGCCATCTTCCAAAGTTGCACCTTCCTAGTCCGTAAGCCCCTTCCAAACCAACAATGCATCGTAACGGCACACGGACGCAAAGAACGCCGCCAACCATCCGCCCTCATCATCCAAAACTGTTCGTTCAAGGCCGACACCGACCTGGCCCCAGTACAAAAACAGTTCCGATCCTTCCTTGGGCGACCATGGAAGGAATATTCGAGAACAATCATCATGGAATCATACATTGGTGATTTGATTCAACCAGAAGGGTGGTTGCCATGGGCTGGAGATTGGGGTTTGAAGACATGTTTTTACACCGAGTTCAACAATTATGGGCCAGGATCTGATAAGTCAAAGAGGGTGAAATGGAGAGGGATTAAGACCATTACGCCACAACATGCTTTGGATTTTACTGCCGGAAGGTTTGTTATGGGGGATAGATGGATTAAGCCCACCGGAGTTCCATATGTCTCCGGCATGACCAGGACCGGCGGAGCTGCTCATTGA 1743 47.96 MGYRDDDSQNKKRYAIIGVSSMLLVAMVVAVTVGVNLNQDETSEPATGNKAHEISASVKAIKAICQPTDYKQECVASLKAAGNNSSDPKELVQAGFKAAMKLIQAAANKSVTLKELEKDPRTSKALAGCKELMDFAVDELKYSMNKLGEFDISKLDEMLIDIKIWLSATITYQETCLDGFENTTGNAAEKMKKALKTSMRLSSNGLAMVSQISSMLTELQIPGISRRRLLEIPVLGHDDYPDWANPGMRRLLAAGTKVKPNVVVAKDGSGQFRTIQEALDKVPKRKNNATFVIHIKAGVYKEYLIIKKSLTHLMLIGDGPKKTIITGSKNFIDGTPTFKTATVAVTAEHFMARDIGFENTAGPHKHQAVALRVQADKAVFYNCEMHGYQDTLYVHTMRQFYRDCTISGTIDFIFGDAAAIFQSCTFLVRKPLPNQQCIVTAHGRKERRQPSALIIQNCSFKADTDLAPVQKQFRSFLGRPWKEYSRTIIMESYIGDLIQPEGWLPWAGDWGLKTCFYTEFNNYGPGSDKSKRVKWRGIKTITPQHALDFTAGRFVMGDRWIKPTGVPYVSGMTRTGGAAH 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32426683 32428603 + CaPI482276_03g017340.1 Cam03g1734 124000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1734 580 SMART PMEI_2 56 208 IPR006501 GO:0004857(InterPro)
Cam03g1734 580 Pfam Plant invertase/pectin methylesterase inhibitor 59 208 IPR006501 GO:0004857(InterPro)
Cam03g1734 580 Pfam Pectinesterase 261 558 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam03g1734 580 FunFam Pectinesterase 57 213 - -
Cam03g1734 580 NCBIfam pectinesterase inhibitor domain 54 212 IPR006501 GO:0004857(InterPro)
Cam03g1734 580 PANTHER PECTINESTERASE 13 563 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam03g1734 580 ProSitePatterns Pectinesterase signature 1. 287 306 IPR018040 -
Cam03g1734 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 213 IPR035513 -
Cam03g1734 580 FunFam Pectinesterase 255 572 - -
Cam03g1734 580 Gene3D - 255 572 IPR012334 -
Cam03g1734 580 SUPERFAMILY Pectin lyase-like 256 571 IPR011050 -
Cam03g1734 580 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Cam03g1734 580 CDD PMEI-like_3 63 214 - -
Cam03g1734 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 213 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1734 Cam-Chr3:32426683 Cam05g0734 Cam-Chr5:6389342 1.30E-197 dispersed
Cam03g1733 Cam-Chr3:32422828 Cam03g1734 Cam-Chr3:32426683 2.90E-103 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1734 K01051 - csv:101207393 1089.33