Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1768 ATGAAGCACTTCTTCTTGAAGTTCAATGAACTAACAAAGTCACTAAAGAGATGGAGAAACTCTGAAAATGCTTCTGATGTATGTGGGAGAGAAGCTGCAGAAGCAATGGCAAAGTCTGCAAAGAAGAAGGATCTGATCATCCATGGTTCCGGGAGTATGAATATCAATGGTTCGAGCAACTTTGTCTCCAGTTTTTCGAAGAGGGGTGAGAAAGGAATCAACCAGGACTGCTGCATTGTGTGGGAGGAATTTGGATGTCAAAAGGATATGATATTTTGTGGGGTTTTTGATGGTCACGGACCATGGGGTCATTTTGTTGCAAAGAAGGTTAGAGAGTCATTGCCAACTACTTTGCTTTGCAATTGGCAAGAAGCACTTGTTCAAACTTCTCTTCACCCACATTTGGAACTCAACTCAGCTAAAACACATCTTCATTTCAATTTGTGGGAGCATTCTTATATAGAAGCTTGTGCTGTGGTGGATCAAGAACTCGAGCGACACCGTAAAATCGACACGTTTCATAGTGGAACAACGGCCCTTTCCATCGTTCGACAAGGTGATACAATTGTCATAGCAAACCTTGGTGACTCCCGGGCCGTCTTGGCTACAACTTCTAATGATGGAAACTCGACGCCGTCACCAATTCAGCTCACTGTCGATTTCAAACCGAATCTACCTCAGGAAGCTGAAAGGATAACACAATGCAATGGGAGGGTTTTCTGCTTGCAAGATGAACCAGGGACTCCCCGTCTTTGGTTGCCGAACGGGGAAACGCCGGGGCTGTCAATGTCGAGATCGTTTGGCGATTTTTGCGTTAAGCATTTTGGACTTATTTCTGTGCCTGATGTAACACAAAGAAGTTTAACCAACAAAGACTTATTTGTTGTACTTGCAACTGATGGGATATGGGACGTCGTCACGAATCAAGAAGCTGTGCAGATCGTACATTCCACTGTTGATAGACAAAAATCTGCTCGACGACTGGTTGATTATGCTACTCATGCATGGAAGCGGAAGAGGCCGAAAATTGCAACGGACGACATGTCGGTTATCGTCCTCTACCTACATTCTTTACCTTTGCATCAACAACCTTTTTCCGCTCGATCCCTGCCTTCCGGCATAAGCACCGCCGCGCCCTTCCTCTTCCTTTCTTCGGCTCCACCGCACCCACACAACAGATTCCCCTCGTATTCTATACCCTCTGAACAACGTCTCAGTGCTCGACCTCCGCATAACATTCCCAAACCTTTCTCTGACTTCACCTTTCACAATTTGGCCTTACAAAACTTCCCCGAATCACTCACCTTCATACCAAATGTTTTCCGTTCCACTCTCAGCGTAATGACAGTCACTGGTTTCTCAGAGAATGCTTTGAAGCGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCCCTTCATAATCTTATCACTTCGAAGAAATATCGAGCATGGCAGAAACCTCTTGAGAGGATTATGTTTAAGTATGTTGACCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGTATTGTTTGCCAGCAAGTTAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTCTCCACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCTTTAGAAGAAGCTCTGGACGTTGATGATTTGGAAGCTGATAAAAGGCCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAGAAGGGAAAGGATAGATCTGATCGAGAACTTGTTACCCCTTGGTTTAAATTTCTGTGGGAGACATATCGAACGGTTCTTGAGATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCTCATCGTGCCTTCCAGTTCTGTAAGGTGTATAAAAGAACAACTGAATTTCGCAGATTATGTGAAATTATCCGAAATCATCTTGCTAATCTCAACAAGTACAGAGACCAAAGAGATCGGCCCGACCTTTCTGCTCCAGAGAGCTTGCAATTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACAGAACTTGAGCTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTTTGATGTGCATGGTGAAGAAAACACCTAAACCATCCTTGATGGTGGTGTATTATGTCAAATTAACAGAGATCTTCTGGATATCGGATTGGAATCTTTACCATGCCTATGCATGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATCTAAGCCAGAAGGATTTACAGCTGATAGCTTCATCTGTTGTTTTAGCAGCTCTTGCAGTGTCCCCCTATGACTCCAAGCATGGTGCTTCTCATTTAGAACTTGAACATGAGAAAGAGCGAAATTTGAGGATGGCGAATCTTATAGGGTTCAATTTAGACTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGGGCAAATCTTCTTTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGCGCAACTCAGGATGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTCTTCCCTCTTGATCTTGCAACAAAATTGCAACCCTTACTAAACAAAATATCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCCGAAGTGCAATTGTCCCAATATGTTCCGGCTCTTGAAAAACTTGCCACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGTCTATGAAAATTGAGAGTCTATCACAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTTATTGCCATGAAAGTTGATCATTCAAGGAACGTTGTGCTATTTGGCAATTTGGGTATTGAATCCGATGGGCTTCGAGACCACCTGACTGTTCTTGCTGAATCCTTAAACAAAGCAAGAGCTATGATCTCTCCTCCAGTTGGGAAAGCATCAAAAACAGGTGACATATTGCCTGATTTGGCAGATATTGTTGATAAAGAGCACAAAAGGCTGCTTGCTCGGAAATTAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGTCAACTTTTGGAAATGGAACGTGAGGAGGAATCAAAAAGGTTAAAATTACTGAAGATAAGTGAAGAGGCTGAGCAGAAGCGGCTTGCAGCAGAATATGAACAAAGGAAAAACCAACGGCTTCGTAGAGAAATAGAAGAACGAGAACTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAGCGTGTTGGTAAAAGGAAGGGAAGCAGGAAGCCAGTTCTTGACTCTGAAAAGTTGACGAAACAAACTTTAATGCAATTGGCCCTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAATTACAGAAGCTAGCCAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGAAGCTGCATTTCAGCAACGTTTGCATGAAGAGAGAATGATTCACGAACGTGATCAGCAGCTCGAGGTTGAGCTAAGCAAGCAGCGCCACGTAGGTGACCTCAAGGAGAAGAATCGATTGGCTAGAATGTTGGAGAGTAAGAAAATTTTCCAAGAAAGAGTCGTGAATCTTCGCCAAGAGGAGTTCAGCAGACGTAGAGCTGAGAGAGAAGAACAGATCAGGCAAGTAATTCAGGCTCGGAAAGCAGAAAGGGAGGCTAAGAGGAAGACAATCTTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAATATTACGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGTCCGAGAGGAAAAAGAGAGAAGAAGCTGAACGCAAGGCTAAATTGGATGAAATTGCTGAGAAGCAGAGACAAAGGGAGCGAGAATTGGAAGAAAAGGAAAGACTGCGGAAAGAAATGCTCTTTGGTGGTGGCAGATCAACTGATCCGCCTGCTAGACCTGATGTTGCTACCGGTTCTCAGCCTCTGGAGTCTGGAACCGCTGCTCCTGCTGCAGCAGCCGCCGCCTCCGCCACATCTCCAGCAAAATACGTGCCAAGGTTTCGACGGACAGAAGGCTCTAGCCCTAATGCACCACCACCTGAATCCGATCGATGGGGAAGCAGCAGGCCTAATAATCGACCATCTCAACCGGATAGCTGGCGCAGTGATGACCGTAGACCGGCTCTTGGAAGTTCAAGGTCGTCATGGTCCTCATCCCGAGCTTCTACTCGTTCTAGCACGGACCGTTGA 4251 44.22 MKHFFLKFNELTKSLKRWRNSENASDVCGREAAEAMAKSAKKKDLIIHGSGSMNINGSSNFVSSFSKRGEKGINQDCCIVWEEFGCQKDMIFCGVFDGHGPWGHFVAKKVRESLPTTLLCNWQEALVQTSLHPHLELNSAKTHLHFNLWEHSYIEACAVVDQELERHRKIDTFHSGTTALSIVRQGDTIVIANLGDSRAVLATTSNDGNSTPSPIQLTVDFKPNLPQEAERITQCNGRVFCLQDEPGTPRLWLPNGETPGLSMSRSFGDFCVKHFGLISVPDVTQRSLTNKDLFVVLATDGIWDVVTNQEAVQIVHSTVDRQKSARRLVDYATHAWKRKRPKIATDDMSVIVLYLHSLPLHQQPFSARSLPSGISTAAPFLFLSSAPPHPHNRFPSYSIPSEQRLSARPPHNIPKPFSDFTFHNLALQNFPESLTFIPNVFRSTLSVMTVTGFSENALKRAEELINVGQKQDALQALHNLITSKKYRAWQKPLERIMFKYVDLCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDWNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVVLAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFNLDSKLESRDVLSRANLLSELVSKGVLSCATQDVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQSMKIESLSQMIPFFDFSAVEKISVDAVKQNFIAMKVDHSRNVVLFGNLGIESDGLRDHLTVLAESLNKARAMISPPVGKASKTGDILPDLADIVDKEHKRLLARKLIIEKRKEEQERQLLEMEREEESKRLKLLKISEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKRKGSRKPVLDSEKLTKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLHEERMIHERDQQLEVELSKQRHVGDLKEKNRLARMLESKKIFQERVVNLRQEEFSRRRAEREEQIRQVIQARKAEREAKRKTIFYVRREEERIRILREEEEARKREESERKKREEAERKAKLDEIAEKQRQRERELEEKERLRKEMLFGGGRSTDPPARPDVATGSQPLESGTAAPAAAAAASATSPAKYVPRFRRTEGSSPNAPPPESDRWGSSRPNNRPSQPDSWRSDDRRPALGSSRSSWSSSRASTRSSTDR 1416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32753353 32768503 - CaPI482276_03g017680.1 Cam03g1768 124034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1768 1416 Coils Coil 1192 1212 - -
Cam03g1768 1416 FunFam Eukaryotic translation initiation factor 3 subunit A 664 715 - -
Cam03g1768 1416 Gene3D UVR domain 664 715 - -
Cam03g1768 1416 FunFam Eukaryotic translation initiation factor 3 subunit A 799 941 - -
Cam03g1768 1416 Pfam Protein phosphatase 2C 86 333 IPR001932 -
Cam03g1768 1416 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 888 979 IPR000717 -
Cam03g1768 1416 Coils Coil 1246 1305 - -
Cam03g1768 1416 Gene3D - 716 790 - -
Cam03g1768 1416 Gene3D - 810 941 - -
Cam03g1768 1416 MobiDBLite consensus disorder prediction 1260 1308 - -
Cam03g1768 1416 Pfam PCI domain 885 955 IPR000717 -
Cam03g1768 1416 MobiDBLite consensus disorder prediction 1260 1416 - -
Cam03g1768 1416 SMART PP2C_4 53 353 IPR001932 -
Cam03g1768 1416 FunFam Eukaryotic translation initiation factor 3 subunit A 715 789 - -
Cam03g1768 1416 MobiDBLite consensus disorder prediction 1362 1384 - -
Cam03g1768 1416 Coils Coil 540 567 - -
Cam03g1768 1416 Coils Coil 1116 1146 - -
Cam03g1768 1416 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 448 1391 IPR027512 GO:0005852(InterPro)
Cam03g1768 1416 MobiDBLite consensus disorder prediction 1396 1416 - -
Cam03g1768 1416 Pfam eIF3a, PCI domain, TPR-like region 455 854 IPR054711 -
Cam03g1768 1416 Coils Coil 1008 1042 - -
Cam03g1768 1416 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 454 1407 IPR027512 GO:0001732(PANTHER)|GO:0002188(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0043614(PANTHER)|GO:0071540(PANTHER)|GO:0071541(PANTHER)
Cam03g1768 1416 CDD PP2Cc 60 355 IPR001932 -
Cam03g1768 1416 Gene3D - 51 357 IPR036457 -
Cam03g1768 1416 ProSiteProfiles PCI domain profile. 763 960 IPR000717 -
Cam03g1768 1416 SUPERFAMILY PP2C-like 58 357 IPR036457 -
Cam03g1768 1416 Coils Coil 1050 1089 - -
Cam03g1768 1416 ProSiteProfiles PPM-type phosphatase domain profile. 61 355 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1797 Cam-Chr2:31062390 Cam03g1768 Cam-Chr3:32753353 1.40E-77 dispersed
Cam03g0825 Cam-Chr3:9725774 Cam03g1768 Cam-Chr3:32753353 0.00E+00 dispersed
Cam03g0827 Cam-Chr3:9757233 Cam03g1768 Cam-Chr3:32753353 0.00E+00 dispersed
Cam03g1768 Cam-Chr3:32753353 Cam06g0487 Cam-Chr6:6979581 1.20E-95 dispersed
Cam03g1768 Cam-Chr3:32753353 Cam02g1581 Cam-Chr2:28721974 9.30E-141 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1768 K03254 - csv:101215735 1499.95