Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1780 ATGGTTTGTGAAGAAGAAGCTGTAATCCAAAAGGTTTGTGAATTATATGATGAAATCTCAAGCCTTGAAAGCCTAAAACCTTGTAACCATGTCGACACTCTCTTCACTAAATTGGTGGTCACGTGCATGCCACCCACCTCCCCTAATTTCCATATCAATTCACTTTCAAAACCACTTCAACAAATGAGATCAAATCTCATTAGCCTTTGTGGTCAAGCTGAGTCTCTTTTAGAGTCTCATTTTTCTGATCTCTTAGCCAAATTTGATTCCCCTATTCACCATCTCCATGTCTTCCCTTACTTCTCTAATTACCTTAAACTTAGTCTCCTTGAATTCTCCATCCTTCGTCGCCACTGCCCCGTCCTGCCCTCTACCGTCGCCTTCGTCGGCTCTGGCCCTCTTCCTCTTACCTCCATCGTCCTCGCCACTCGCCACCTCACCTCCGCTGTCTTCCACAATTACGATCTCGACCCCCTTGCTAATTCCAAGGCATCGAAGTTGGTGTCGCTCGACCCGGACCTGAAGACGAGGATGGTGTTTCACACGTGCGACATCATGAAAGTGACGGAGGAGCTGAAACAGTACGAGGTTGTGTTTTTGGCAGCTCTTGTAGGAATGGAGAAAGAAGAGAAATTGAAAGTGATTAAGCATTTGTCAGAGTTCATGTCAGAAGGAGCTTATTTGATGGTGAGAAGTGCTCATGGAGGAAGAGCTTTTCTATATCCTGTGGTTGAAGATTGTGATTTGGTAGGGTTTGAGGTTCTATCTGTGTTTCATCCCACTGATGAGGTTATAAACTCGGTAATAATTGCACGAAAAAAGATGAGTTTAGATAACGATAACAATAATGACAACAGTAACGATAACAACGACAAGAGTTGTTGTTTGTCTGTTAATTCAGATAAACAAGAGGAAGATGAGAATGAGAAGGTGATGATTAGTAGCAGTGGTATTGATCATAAGAATAATAACAATGGGGTTGTGCATAATAACAAATGTTCTGAGATTCAAAGCTTCAATAATCATGGAGGTAAGATTGAGGAATTTGCCATGGAAGCAGCAGCTGAGTAA 1071 42.3 MVCEEEAVIQKVCELYDEISSLESLKPCNHVDTLFTKLVVTCMPPTSPNFHINSLSKPLQQMRSNLISLCGQAESLLESHFSDLLAKFDSPIHHLHVFPYFSNYLKLSLLEFSILRRHCPVLPSTVAFVGSGPLPLTSIVLATRHLTSAVFHNYDLDPLANSKASKLVSLDPDLKTRMVFHTCDIMKVTEELKQYEVVFLAALVGMEKEEKLKVIKHLSEFMSEGAYLMVRSAHGGRAFLYPVVEDCDLVGFEVLSVFHPTDEVINSVIIARKKMSLDNDNNNDNSNDNNDKSCCLSVNSDKQEEDENEKVMISSSGIDHKNNNNGVVHNNKCSEIQSFNNHGGKIEEFAMEAAAE 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32916765 32918499 + CaPI482276_03g017800.1 Cam03g1780 124046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1780 356 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 278 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cam03g1780 356 Pfam Nicotianamine synthase protein 5 275 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cam03g1780 356 PANTHER NICOTIANAMINE SYNTHASE 3 5 300 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cam03g1780 356 MobiDBLite consensus disorder prediction 280 326 - -
Cam03g1780 356 Gene3D Vaccinia Virus protein VP39 7 275 IPR029063 -
Cam03g1780 356 MobiDBLite consensus disorder prediction 280 297 - -
Cam03g1780 356 MobiDBLite consensus disorder prediction 298 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1554 Cam-Chr2:28502583 Cam03g1780 Cam-Chr3:32916765 5.00E-83 dispersed
Cam06g1467 Cam-Chr6:26088140 Cam03g1780 Cam-Chr3:32916765 2.10E-76 transposed
Cam02g1553 Cam-Chr2:28488469 Cam03g1780 Cam-Chr3:32916765 1.70E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1780 K05953 - csv:101218907 570.081