Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1800 ATGACAAGGAAGAAAGTGAAACTTGCTTACATAGCAAATGACTCTGCAAGAAAGGCAACATTCAAGAAGAGGAAGAGAGGGCTTATGAAGAAGGTAAGTGAATTGAGCACTCTTTGTGGGATTGAGGCTTGTGCAATCGTCTTTAGTCCTTACGATTCTCAGCCTGAGCTATGGCCTTCCCCCATTGGAGTCCAACGCGTTCTCTCCCAGTTCAAGAAGATGCCCGAGATGGAGCAGAGCAAGAAGATGGTGAACCAAGAGACGTTTCTAAGGCAGAGGATCGCAAAGGCGAACGAGCAATTGAAGAAGATGAGAAAGGACAACCGAGAGAAAGAGATCACACGGTTGATGTTTCAGAGCCTCACGGCTACAAAAGGGCTGCATGGCCTCAACATGCTTGATTTGAACGATCTAGGTTGGCTTATTGATCAGAATCTTAAAGACATTGATACACGCATTGACACTCTAAAAAAGCCTCCGACTCAACTACAACCTCAGCCCCAATCCCAGCCCCCACCTCAACCTTCACAAACTCAACCGCTCACGGCGGCGTGGCTCATGGAGCTTGTGAGCCCTCAGGATCAAATGGGGTTTGTTGGGGAAGATATGCTTTTGCCTTTTGGGGATCAAACTTATAACCCTAATAATGCAATGTGGTCCAATGCCTTTTTCCCTTAG 678 46.9 MTRKKVKLAYIANDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDSQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLTATKGLHGLNMLDLNDLGWLIDQNLKDIDTRIDTLKKPPTQLQPQPQSQPPPQPSQTQPLTAAWLMELVSPQDQMGFVGEDMLLPFGDQTYNPNNAMWSNAFFP 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33115617 33116385 - CaPI482276_03g018000.1 Cam03g1800 124066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1800 225 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam03g1800 225 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam03g1800 225 MobiDBLite consensus disorder prediction 157 179 - -
Cam03g1800 225 MobiDBLite consensus disorder prediction 164 178 - -
Cam03g1800 225 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Cam03g1800 225 Coils Coil 87 114 - -
Cam03g1800 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam03g1800 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam03g1800 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam03g1800 225 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Cam03g1800 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam03g1800 225 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam03g1800 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 165 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam03g1800 225 Gene3D - 13 115 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1057 Cam-Chr1:15317010 Cam03g1800 Cam-Chr3:33115617 1.20E-63 dispersed
Cam03g1800 Cam-Chr3:33115617 Cam10g1784 Cam-Chr10:31912920 3.30E-32 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51719 PF00319 SRF-TF 6.50E-19 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1800 - - - 0.0