Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0053 ATGCCCCCATTTCTCTTCTTCTTCCTACTCACCTTCTCCTTGTTCGTTTCTTTTACTTCCTCTCTCAACTCCGATGGCCTCTCCCTCCTCGCCCTCAAGGCCGCCATTGAATCCGACCCATCTCACATCCTCGAGTCTTGGTCCGAGTTCGACTCCACCCCATGCCACTGGCCAGGAATCGTCTGCACTCGCGACCGAGTCACTCAGCTCTCTCTCCCCAACAAAGGCCTCACCGGCTACATCCCTTCCGAACTCGGCCTCCTCGATTCCCTCCGCCGCCTCACTCTCGCCTTCAACAATTTCTCTAAACCCATTCCTTCTCATCTCTACAACGCTACAAATCTCGTCGTTCTAGACCTTTCCCACAACTCTCTCTCTGGTTCACTGTCTGATCAAATCGGCGATCTGAAGAAGCTTCGGCATCTCGATTTATCCTCAAATGCCCTCAATGGCTCTCTCCCTAATCGCCTCACTGACCTAACCGAACTCGTCGGGACTCTCAATTTGTCCTACAATCGATTCTCCGGCGAGGTTCCGCCTTCCTTCGGCAACCTCCCGCTGATCGTGAATCTAGACGTCCGTCACAACAATCTCACCGGAAAAATCCCTCAAGTGGGTTCGCTGTTGAATCAAGGCCCAACGGCGTTCTCCGGAAACCCGAGTCTGTGTGGGTTTCCGTTACAGACGCCATGTCCGGAAGCACAGAATCCGAATGCCTTTCCTGAGAATCCGCAGAATCCCAAGTCACTGAACCCGAACTTCCCGGGCTACGGAGGCCGGAGAGAGAGTAGCGGCGGTGGGGTGGCCGGGTCGGCGGCGGTGGCAGTGGTGTCGTCGATATTCGCAGTTGTGGGGGCGGTGTCGCTGACGGTGTGGTGGTTCCGGAGGAAGGCGGTAGTGGGGAGGCTGGAAGAGGGCAAAACTGGAAAGGGCAGTCCGGAAGGGGAAAGTTGCGGGGAGTTGGAAGGGCAAGATGGTAAATTCGTGGTGATGGATGAAGGGATGAATTTGGAATTAGAGGATTTGTTGAGGGCATCGGCGTACGTGGTGGGGAAGAGTAGGAGTGGGATAGTGTACAAAGTAGTGGCGGGGAGGGGATCCAGTGCGGGCGCGAGTATTGTAGCTGTAAGGAGACTTAACGATGGTGATGCCACGTTGACGTTTAAGGATTTTGAGAATGAGATCGAGGCCATTGGTAGGGTTCAGCATCCCAACATCGTACGGTTGAGAGCTTATTACTATGCAACTGACGAGAAATTGCTGGTTACTGATTTCATCAAGAATGGAAGCTTGCACACCGCCCTACATGGAAGTCCCTCCAGTTGTTTGTCACCTCTGCCATGGTCTGCCAGGTTAAAAATTGCCCAAGGAGCTGCAAGGGGTTTGGCATACATTCATGAATTTGGTGCTCGGAAATACGTACATGGAAACATCAAAGCGACGAAAATCCTTGTGGATGAGGATTTCGAGGCTTACATTTCAGGTTTTGGACTAGGTCGACTTGGCCAAGGAGCACCTAAGTTGACTGCAACTTCGTCCAAGAAGTTGAGCTCAAATCAGAATATAATAAGCTCAATGATGGGGCCAAGCATTTCAAGTCCCTCAGTGATGTACTTGGCGCCGGAGGTACGGGAGTTTGGAGGGAAGTACACGCAGAAATGTGACGTGTACTCGTTCGGGATGGTGCTTCTACAACTTTTGAGCGGTAGATTGGAAAATGATGGGAAGGGGTTGGAATGGTTGGTGAGAAAGGCATTTGAAGAAGAGCGGCCATTGACAGAGGTTATAGACCCTGCGCTTGTGCCTGAGATTTATGCCAAGAAACAAGTGGTTTCCATGTTTCACATTGCACTGAATTGCACAGAGCTTGACCCCGAGCTGCGTCCCAGAATGAGAACGGTGTCGGAGAGTCTGGATCGAATCAAATCTGAGTGA 1935 51.99 MPPFLFFFLLTFSLFVSFTSSLNSDGLSLLALKAAIESDPSHILESWSEFDSTPCHWPGIVCTRDRVTQLSLPNKGLTGYIPSELGLLDSLRRLTLAFNNFSKPIPSHLYNATNLVVLDLSHNSLSGSLSDQIGDLKKLRHLDLSSNALNGSLPNRLTDLTELVGTLNLSYNRFSGEVPPSFGNLPLIVNLDVRHNNLTGKIPQVGSLLNQGPTAFSGNPSLCGFPLQTPCPEAQNPNAFPENPQNPKSLNPNFPGYGGRRESSGGGVAGSAAVAVVSSIFAVVGAVSLTVWWFRRKAVVGRLEEGKTGKGSPEGESCGELEGQDGKFVVMDEGMNLELEDLLRASAYVVGKSRSGIVYKVVAGRGSSAGASIVAVRRLNDGDATLTFKDFENEIEAIGRVQHPNIVRLRAYYYATDEKLLVTDFIKNGSLHTALHGSPSSCLSPLPWSARLKIAQGAARGLAYIHEFGARKYVHGNIKATKILVDEDFEAYISGFGLGRLGQGAPKLTATSSKKLSSNQNIISSMMGPSISSPSVMYLAPEVREFGGKYTQKCDVYSFGMVLLQLLSGRLENDGKGLEWLVRKAFEEERPLTEVIDPALVPEIYAKKQVVSMFHIALNCTELDPELRPRMRTVSESLDRIKSE 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1557467 1564199 - CaPI482276_04g000530.1 Cam04g0053 124131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0053 644 PRINTS Leucine-rich repeat signature 136 149 - -
Cam04g0053 644 PRINTS Leucine-rich repeat signature 115 128 - -
Cam04g0053 644 Pfam Leucine rich repeat N-terminal domain 22 63 IPR013210 -
Cam04g0053 644 SUPERFAMILY L domain-like 24 228 - -
Cam04g0053 644 Gene3D Ribonuclease Inhibitor 165 233 IPR032675 -
Cam04g0053 644 Gene3D Ribonuclease Inhibitor 22 164 IPR032675 -
Cam04g0053 644 Gene3D Phosphorylase Kinase; domain 1 326 425 - -
Cam04g0053 644 Gene3D Transferase(Phosphotransferase) domain 1 426 644 - -
Cam04g0053 644 MobiDBLite consensus disorder prediction 238 262 - -
Cam04g0053 644 Pfam Leucine Rich Repeat 166 185 IPR001611 GO:0005515(InterPro)
Cam04g0053 644 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515(InterPro)
Cam04g0053 644 FunFam Leucine-rich repeat receptor-like protein kinase 138 233 - -
Cam04g0053 644 MobiDBLite consensus disorder prediction 238 252 - -
Cam04g0053 644 SUPERFAMILY Protein kinase-like (PK-like) 349 639 IPR011009 -
Cam04g0053 644 ProSiteProfiles Protein kinase domain profile. 344 641 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g0053 644 FunFam Leucine-rich repeat receptor-like kinase 27 130 - -
Cam04g0053 644 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 642 IPR046959 -
Cam04g0053 644 Pfam Protein tyrosine and serine/threonine kinase 350 638 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0053 Cam-Chr4:1557467 Cam11g1410 Cam-Chr11:26771885 6.60E-94 dispersed
Cam04g0053 Cam-Chr4:1557467 Cam05g2445 Cam-Chr5:32390926 3.60E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85090 PF07714 PK_Tyr_Ser-Thr 6.70E-26 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0053 - - - 0.0