Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0087 ATGGGAGACCCATATTCAAACTCATCAGCAAGTGTTCTAAAATTCAACTCCCTTCACCACCATTTTTCCCCATCACAACCTTCAAATTCTACCCCACACCTCAACATGTCTCACAATTGCTTCTCTTACCCCTACCCGAACCCGCATCCGCCTCCGCCTCCATCTCCACCGCTCCGTGAGGCTCTGCCGCTTCTCGGGCTGATGTCTCCACCCGAGCAGCGGCAGGAGCAAGAAGAAGAAGACGACGGCGGAGGCGGGAGAGATGAGGAGGAATCGGTGACGGTGGCGTTGCACATAGGGCTACCGAGCCCTAGCGCGGCAGAGATAGCATCTTTGATGTGTGGTTCTTCATCTGAGATTGATCATGTTGGTGATGGAGATCATAGCAATAGTAATAATAATAATCAAGATCATGATTTAGGGCAGTCCACCAAAACCCTAATAAAGGGGCAGTATTGGATCCCTACTCCTTCTCAAATTCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGCCCAGAGTCCCTCCGGGGCACGCAGCCAACGGGAATGCTACGACTTCCATGTTACTGCTGTGCACCGGGGTGTCGCAACAACATAGACCACCCTCGAGCCAAACCCTTGAAGGACTTCAGAACCCTGCAAACGCATTACAAGCGCAAGCATGGCCTGAAGCCCTTCATGTGTCGAAAGTGCGGTAAGGCGTTTGCCGTGCGCGGGGACTGGCGGACGCACGAGAAGAATTGTGGCAAGCTTTGGTACTGCATTTGTGGCTCGGATTTCAAACACAAGCGCTCTTTGAAGGACCATGTCAAGGCCTTCGGTAACGACCACGCCGCCTATGGTGGGGGCGGGATCGATGGGTTCGGAGACGAGGAAGATGAGCCTGCTTCAGAAGTCGAGCAGGATAATGATGAGTGA 993 51.96 MGDPYSNSSASVLKFNSLHHHFSPSQPSNSTPHLNMSHNCFSYPYPNPHPPPPPSPPLREALPLLGLMSPPEQRQEQEEEDDGGGGRDEEESVTVALHIGLPSPSAAEIASLMCGSSSEIDHVGDGDHSNSNNNNQDHDLGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGGGIDGFGDEEDEPASEVEQDNDE 330
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 2650758 2653643 - CaPI482276_04g000870.1 Cam04g0087 124165
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0087 330 Pfam Zinc finger, C2H2 type 167 186 IPR013087 -
Cam04g0087 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 194 IPR013087 -
Cam04g0087 330 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
Cam04g0087 330 MobiDBLite consensus disorder prediction 312 330 - -
Cam04g0087 330 FunFam zinc finger protein WIP2-like 166 189 - -
Cam04g0087 330 Gene3D Classic Zinc Finger 166 189 - -
Cam04g0087 330 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 250 274 - -
Cam04g0087 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 271 IPR013087 -
Cam04g0087 330 PANTHER ZINC FINGER PROTEIN WIP2 31 328 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cam04g0087 330 SUPERFAMILY beta-beta-alpha zinc fingers 163 189 IPR036236 -
Cam04g0087 330 MobiDBLite consensus disorder prediction 308 330 - -
Cam04g0087 330 SUPERFAMILY beta-beta-alpha zinc fingers 236 271 IPR036236 -
Cam04g0087 330 FunFam Zinc finger protein WIP2 220 302 - -
Cam04g0087 330 MobiDBLite consensus disorder prediction 71 91 - -
Cam04g0087 330 MobiDBLite consensus disorder prediction 127 141 - -
Cam04g0087 330 SMART c2h2final6 167 189 IPR013087 -
Cam04g0087 330 SMART c2h2final6 251 271 IPR013087 -
Cam04g0087 330 Gene3D Classic Zinc Finger 214 304 - -
Cam04g0087 330 MobiDBLite consensus disorder prediction 118 141 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1289 Cam-Chr1:23353760 Cam04g0087 Cam-Chr4:2650758 6.90E-66 dispersed
Cam04g0087 Cam-Chr4:2650758 Cam10g1689 Cam-Chr10:30892563 2.20E-101 dispersed
Cam04g0087 Cam-Chr4:2650758 Cam02g2408 Cam-Chr2:36548527 8.60E-98 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51725 None None None None Cam TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0087 - - - 0.0