Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0103 ATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAGGTCATGACATAGCAATGTCTAAATCAGAGAATATTTCTACATCCTCAAAAGGCCCACTTGGTTTGAGTGGGAAAATTGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCGAATGGCCACACATTGTGCTCAAACTGCAAGATCAGAGTTAGCAACTGTTGCCCGACCTGTCGTCATGAACTTGGAAACATTAGGTGCTTGGCACTGGAAAAGGTAGCTGAGTCACTGGAAATTCCCTGCAAATACCAGAATTTGGGCTGTCAAGATATTTTTCCCTACTACAGTAAGCTTAAGCATGAGCAACACTGTCGATACCGTCCTTACAACTGCCCATATGCTGGATCAGAGTGTTCGGTCACTGGTGACATCCCGTCTCTTGTTGCACATCTCAAAGATGATCACAAGGTTGACATGCATGATGGGTGTACCTTCAATCATCGCTATGTGAAATCAAATCCACACGAAGTTGAAAATGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAAGCAGTTCTGCTTGCATTTTGAGGCATTCCAGCTAGGAATGGCACCTGTTTACATGGCGTTTTTACGATTCATGGGCGACGATAACGAAGCAAAGAAGTTCAGCTACAGTTTGGAAGTGGGTGGCAATGGGCGTAAACTGATATGGCAAGGAATCCCGAGGGGCATCCGCGACAGTCACCGAAAAGTTCGTGACAGTCAGGACGGTCTCATTATTCAAAGAAACCTGGCACTGTATTTTTCGGGAGGAGAGAGGCAAGAGCTGAAGCTGAGAATTACAGGTCGAATATGGAAAGAAGAATGA 924 45.24 MAPGSSTCKEVVDSHPSVSGHDIAMSKSENISTSSKGPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNCCPTCRHELGNIRCLALEKVAESLEIPCKYQNLGCQDIFPYYSKLKHEQHCRYRPYNCPYAGSECSVTGDIPSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGKQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3182037 3185170 + CaPI482276_04g001030.1 Cam04g0103 124181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0103 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 113 IPR013083 -
Cam04g0103 307 MobiDBLite consensus disorder prediction 21 36 - -
Cam04g0103 307 ProSiteProfiles Zinc finger RING-type profile. 59 95 IPR001841 -
Cam04g0103 307 Pfam Sina, zinc finger 108 183 - -
Cam04g0103 307 SUPERFAMILY TRAF domain-like 112 304 - -
Cam04g0103 307 MobiDBLite consensus disorder prediction 1 36 - -
Cam04g0103 307 ProSiteProfiles Zinc finger SIAH-type profile. 112 172 IPR013010 GO:0008270(InterPro)
Cam04g0103 307 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 110 - -
Cam04g0103 307 FunFam E3 ubiquitin-protein ligase SINAT5-like 168 300 - -
Cam04g0103 307 SUPERFAMILY RING/U-box 53 100 - -
Cam04g0103 307 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 59 94 IPR049548 -
Cam04g0103 307 CDD Sina 173 301 - -
Cam04g0103 307 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 300 IPR008974 GO:0005515(InterPro)
Cam04g0103 307 Pfam Sina, TRAF-like domain 203 300 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cam04g0103 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 166 IPR013083 -
Cam04g0103 307 FunFam E3 ubiquitin-protein ligase SINAT3 111 167 - -
Cam04g0103 307 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 40 302 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cam04g0103 307 CDD RING-HC_SIAHs 57 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0103 K04506 - - rcu:8260973 582.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2452 Cam-Chr2:36975189 Cam04g0103 Cam-Chr4:3182037 5.60E-134 dispersed
Cam04g0103 Cam-Chr4:3182037 Cam05g1061 Cam-Chr5:9702668 8.50E-132 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1287 . . . . Bpe04g01449 Bpe03g01154 . Bma10g00318 . . . Cma07g01290 . . . . . . . . . . . . Cla04g00105 Cam04g0103 Cec04g0184 Cco04g0173 Clacu04g0147 Cmu04g0175 Cre04g0159 Cone3ag0097 . . . . Csa04g01349 . . Blo07g01280 . Bda03g01584 Bda05g01268 . . . . . Cmo03g00108 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g0887 . 77 566 C3H Transcription Factor Family AT2G31510 75.1 4.7e-225 777.3
Cam11g0915 . 5 416 C3H Transcription Factor Family AT2G31510 55.0 6.5e-110 394.8
Cam08g0887 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.0e-169 591.7
Cam08g0887 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.1e-167 584.3
Cam01g1548 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.4e-47 186.4
Cam01g1548 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.4e-47 186.4
Cam11g0520 . 100 325 C3H Transcription Factor Family AT3G02290 62.8 5.0e-76 281.2
Cam06g1283 . 105 409 C3H Transcription Factor Family AT1G11020 75.6 1.7e-135 479.2
Cam07g1487 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 3.9e-68 255.0
Cam04g0213 . 91 451 C3H Transcription Factor Family AT5G08750 61.0 4.7e-121 431.4
Cam10g0890 . 26 456 C3H Transcription Factor Family AT3G16090 71.8 2.4e-168 589.0
Cam11g0520 . 96 324 C3H Transcription Factor Family AT5G38895 57.4 1.2e-73 273.9
Cam08g2009 . 16 227 C3H Transcription Factor Family AT1G19310 66.8 1.2e-79 293.1
Cam01g1661 . 16 225 C3H Transcription Factor Family AT1G19310 58.4 3.2e-67 251.9
Cam01g1955 . 9 323 C3H Transcription Factor Family AT2G22120 83.9 1.9e-159 558.9
Cam08g1520 . 70 177 C3H Transcription Factor Family AT5G07040 67.6 3.0e-40 161.8
Cam06g1639 . 30 418 C3H Transcription Factor Family AT1G18470 76.1 5.7e-179 624.0
Cam01g0608 . 128 359 C3H Transcription Factor Family AT1G68200 50.2 4.8e-50 195.3
Cam08g0887 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.0e-169 591.7
Cam08g0887 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.1e-167 584.3
Cam07g0061 . 25 372 C3H Transcription Factor Family AT2G30580 51.1 8.9e-82 300.8
Cam09g2180 . 46 278 C3H Transcription Factor Family AT5G55970 68.2 3.3e-94 342.0
Cam04g0213 . 91 451 C3H Transcription Factor Family AT5G63780 57.2 7.8e-116 414.1
Cam10g1724 . 1 428 C3H Transcription Factor Family AT3G58030 52.7 3.7e-104 375.6
Cam09g2180 . 48 347 C3H Transcription Factor Family AT4G26580 63.7 6.9e-111 397.5
Cam04g0617 . 28 492 C3H Transcription Factor Family AT5G01960 68.7 6.6e-167 583.9
Cam07g0542 . 1 484 C3H Transcription Factor Family AT5G01960 57.7 1.5e-150 529.6
Cam02g1133 . 1 152 C3H Transcription Factor Family AT2G04240 60.1 1.0e-43 173.3
Cam02g0314 . 1 149 C3H Transcription Factor Family AT2G04240 58.4 4.9e-38 154.5
Cam02g2364 . 1 245 C3H Transcription Factor Family AT5G19430 53.3 2.2e-64 242.7
Cam07g1439 . 130 585 C3H Transcription Factor Family AT5G45290 52.7 6.0e-104 375.2
Cam02g2364 . 40 245 C3H Transcription Factor Family AT5G12310 56.4 2.7e-59 225.7
Cam06g1537 . 412 704 C3H Transcription Factor Family AT5G05810 52.8 2.2e-74 276.6
Cam11g0671 . 53 205 C3H Transcription Factor Family AT5G05830 58.8 4.0e-45 178.3
Cam04g0750 . 482 612 C3H Transcription Factor Family AT5G05830 61.8 3.0e-40 162.2
Cam06g0968 . 30 426 C3H Transcription Factor Family AT4G28890 50.5 6.2e-96 348.2
Cam11g0520 . 100 325 C3H Transcription Factor Family AT5G15790 59.9 4.7e-74 274.6
Cam11g0705 . 1 272 C3H Transcription Factor Family AT3G55530 80.2 4.9e-115 411.0
Cam09g0661 . 35 307 C3H Transcription Factor Family AT1G63900 75.5 9.1e-117 416.8
Cam05g0315 . 10 392 C3H Transcription Factor Family AT2G44580 53.7 1.9e-120 429.5
Cam08g2009 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 9.0e-41 163.3
Cam05g1761 . 3 314 C3H Transcription Factor Family AT5G20910 63.1 7.1e-110 394.0
Cam10g0890 . 144 444 C3H Transcription Factor Family AT1G65040 69.3 8.6e-111 397.1
Cam01g1661 . 17 227 C3H Transcription Factor Family AT2G23780 61.2 4.3e-72 268.1
Cam08g2009 . 6 229 C3H Transcription Factor Family AT2G23780 57.0 6.8e-70 260.8
Cam10g1604 . 1 317 C3H Transcription Factor Family AT3G10810 53.3 8.4e-81 298.1
Cam01g0249 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 1.9e-45 179.1
Cam01g0669 . 18 353 C3H Transcription Factor Family AT1G68070 64.1 6.0e-118 421.0
Cam11g1908 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.6e-51 198.7
Cam10g0013 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 4.8e-45 177.9
Cam08g1746 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 2.6e-112 402.5
Cam10g0013 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.1e-39 157.9
Cam08g0887 . 77 566 C3H Transcription Factor Family AT2G31510 75.1 4.7e-225 777.3
Cam11g0915 . 5 416 C3H Transcription Factor Family AT2G31510 55.0 6.5e-110 394.8
Cam01g1548 . 7 168 C3H Transcription Factor Family AT2G35910 64.0 1.0e-54 210.3
Cam10g1782 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 4.9e-41 164.9
Cam04g0103 . 1 307 C3H Transcription Factor Family AT2G41980 80.5 4.8e-151 530.8
Cam05g1062 . 671 928 C3H Transcription Factor Family AT2G41980 80.6 1.5e-128 456.1
Cam05g1061 . 61 318 C3H Transcription Factor Family AT2G41980 79.8 9.7e-128 453.4
Cam02g2452 . 41 337 C3H Transcription Factor Family AT2G41980 71.8 3.7e-127 451.4
Cam01g0781 . 48 305 C3H Transcription Factor Family AT2G41980 79.1 1.2e-125 446.4
Cam06g0099 . 43 301 C3H Transcription Factor Family AT2G41980 75.3 2.5e-123 438.7
Cam05g2872 . 197 445 C3H Transcription Factor Family AT2G41980 79.1 1.1e-120 429.9
Cam05g0636 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 2.6e-95 345.9
Cam10g2000 . 33 329 C3H Transcription Factor Family AT3G09770 59.0 1.3e-85 313.5
Cam06g1842 . 58 368 C3H Transcription Factor Family AT3G47990 69.7 1.6e-127 452.6
Cam01g1436 . 58 349 C3H Transcription Factor Family AT3G47990 69.8 1.1e-120 429.9
Cam11g1908 . 4 183 C3H Transcription Factor Family AT1G20823 55.6 1.1e-50 196.8
Cam10g0013 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.2e-46 183.3
Cam09g1833 . 35 403 C3H Transcription Factor Family AT3G18930 54.4 3.0e-84 309.3
Cam10g0047 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 6.9e-75 277.3
Cam10g2038 . 3 273 C3H Transcription Factor Family AT5G02750 53.4 6.1e-68 254.6
Cam06g1639 . 34 490 C3H Transcription Factor Family AT1G73950 72.4 5.9e-195 677.2
Cam08g0171 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 7.2e-39 157.9
Cam01g0669 . 15 251 C3H Transcription Factor Family AT2G01735 60.8 5.1e-74 274.6
Cam10g0346 . 127 336 C3H Transcription Factor Family AT2G01735 53.3 4.2e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000123 7 13 5 5 9 4 10 5 6 5 4 3 7 6 6 10 5 13 9 4 6 6 7 7 7 5 6 22 16 5 223