Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0113 ATGGGAGACGGCAATAACACCAATAGAGGCCTTGTCTCCGCCAACGCCGCAAACCGGAACACCACCAACAACAGCAACAACGGCAGCCACCACAAGAAGCCCGAGTGGCTGCAGCAGTACGATCTAATTGGGAAGATCGGAGAAGGAACCTATGGCCTCGTGTTCCTTGCTAAAATCAAACCCCCTTCGCCAAGTCGCGGCAAGTCAATTGCCATCAAAAAATTTAAGCAATCTAAGGACGGTGATGGCGTCTCCCCAACTGCCATCCGCGAAATTATGTTACTGCGGGAAATATCACACGAAAATGTTGTCAAGCTTGTAAATGTTCATATCAACCATGCAGATATGTCGCTGTATTTAGCTTTTGATTATGCTGAACACGACCTCTACGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTTAATCAGTACACCGTTAAATCCTTGCTCTGGCAACTTCTCAATGGTTTGAACTATCTCCACAGCAATTGGATCATTCATCGCGATTTAAAGCCATCAAATATTTTGGTTATGGGTGAAGGAGAAGAACAAGGAGTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATCTGAAAATGGAGTTGTTGTCACCATTTGGTATCGAGCACCTGAACTTCTCCTTGGAGCAAAGCACTATACTAGTGCTGTTGATATGTGGGCTGTTGGATGTATTTTTGCCGAGCTTTTGACGTTGAAGCCATTATTTCAAGGTCAAGAAGTCAAAGGGACACCAAATCCTTTCCAGCTTGATCAACTCGACAAGATTTTTAAGGTTTTAGGCCATCCGACACTAGAAAAGTGGCCAACACTTGCTAATCTTCCACATTGGCAACAAGATCTACAGCACATCCAGGGGCATAAATATGACAATGCTGGATTGTATAATGTTGTCCACCTTTCTCCAAAAAGTCCTGCATACGATCTTCTGTCCAAAATGCTGGAGTATGATCCTCGAAAGCGTATAACAGCAGCCCAAGCCCTAGAGCATGAGTATTTTTGTTTAGAACCTCTTCCGGGATACAATGCTCTGGTACCGATCCAACCTGGAGAGAAGGTCATTAATTATCCAACTCGCCCTGTGGACACAACCACAGATTTTGAGGGAACAACTAACCTTCAACCTTCACAAACGGTAACATCTGGAAATACTGTAAACATGCAAGGTGCTCATATGGCAAGATCTGTCCCTCGGGCAATGGGAGTTGGCATGCCTAGGATGCCGCATCAGAGCATGGCTGCCTACAACCTTGCATCTCAGGCTGGGATGGGTATGAATCCTGGTGGCATCCCTATGCAGCGAGGTGTCTCTTCCCAAGCTCATCAGCAACAACAGTTAAGGAGAAAAGATCCTGGAATGGGAATGTCTGGTTATCCTCCCCAGCAGAAACAACAAAGACGCAACAAGCCCATGAGGGAAATATTACACGGTCATCAGACTTGCTTTTACTCGTTCAACTTTGCTAACTTTTCTTTTGTTTTCTGGGTCATGTTTCCTGCAGTGGTTGCAGGAAGGTCTGAAATTACTTTGTCGGCTTTGCCCAAAATTTTTCCATACGCATCTACAAAGCTGAGGTGGCGTTTGCTTGTTGATTTATCTGCAACCCGAGGTTCATCAACTCACCCGAATAATTTAAGATCCAAGCATGTTGCTTGA 1710 44.85 MGDGNNTNRGLVSANAANRNTTNNSNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGQEVKGTPNPFQLDQLDKIFKVLGHPTLEKWPTLANLPHWQQDLQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFCLEPLPGYNALVPIQPGEKVINYPTRPVDTTTDFEGTTNLQPSQTVTSGNTVNMQGAHMARSVPRAMGVGMPRMPHQSMAAYNLASQAGMGMNPGGIPMQRGVSSQAHQQQQLRRKDPGMGMSGYPPQQKQQRRNKPMREILHGHQTCFYSFNFANFSFVFWVMFPAVVAGRSEITLSALPKIFPYASTKLRWRLLVDLSATRGSSTHPNNLRSKHVA 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3381480 3393771 + CaPI482276_04g001130.1 Cam04g0113 124191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0113 569 PANTHER CELL DIVISION PROTEIN KINASE 39 351 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016592(PANTHER)
Cam04g0113 569 FunFam Cyclin-dependent kinase e-1 28 124 - -
Cam04g0113 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g0113 569 Pfam Protein kinase domain 40 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g0113 569 Gene3D Transferase(Phosphotransferase) domain 1 123 361 - -
Cam04g0113 569 ProSiteProfiles Protein kinase domain profile. 40 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g0113 569 FunFam Putative cyclin-dependent kinase E-1 125 364 - -
Cam04g0113 569 SUPERFAMILY Protein kinase-like (PK-like) 35 352 IPR011009 -
Cam04g0113 569 CDD STKc_CDK8_like 39 351 - -
Cam04g0113 569 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Cam04g0113 569 MobiDBLite consensus disorder prediction 452 487 - -
Cam04g0113 569 ProSitePatterns Protein kinases ATP-binding region signature. 46 74 IPR017441 GO:0005524(InterPro)
Cam04g0113 569 SMART serkin_6 40 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0113 Cam-Chr4:3381480 Cam08g2196 Cam-Chr8:27313052 1.30E-69 dispersed
Cam04g0113 Cam-Chr4:3381480 Cam04g1236 Cam-Chr4:26386648 6.80E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85095 PF00069 Pkinase 2.90E-68 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0113 K02208 - csv:101203984 936.021