Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0115 ATGTTGAATTATATTCATCGTCGGAATCTGATCGGAGATCGCGATTTGATGCAGCCATTATTAGTGTTGTCAAAGTCTGATAATAAGTACGACGGATCTGAGATGTTTAACAACACATCAAAAGGGGAAAACGATTCTCACGGAGGAGGAATGAATGTAAATGCACAAAATTTCGTGAAAAATCCACCGGATTCTCTAAGAAGAATCGATCAAATCGCGAAAAACGGCATAAATTCCGGTAATCCGTCGTCGACGGTGAATGCTGAGATTCACTCCAGTCAGCCAGGGGGATCGATTGCGCCAATTCCGACCAGCACATCAGCGACGAACTTGAAGAACCTAAACAATAACAACAACAGCAACAATAACAACTCTGGTTTCATGGCGACGAAGGGCGGTGGCAGCGGCGGAAATAATTATCGTTGTGACAGCATGGAGACACCGGGAGTGGTGATAAAGCCGCACACGGGCGGAGATGTGCGGTGGGATGCCATTAACATGGTGTCGAAAGGAGGGGCTTTGAATCTAAGCCATTTCCAGTTATTGAAGAGGCTTGGTTATGGGGATATTGGAAGCGTTTATTTGGTTGAATTGAGAGGAACTGATACATTTTTCGCCATGAAAGTGATGGATAAAGCTTCATTAGCAAGTAGGAATAAACTTTTGAGGGCACAAACAGAAAGGGAAATTCTAGGGCTTTTGGATCATCCATTTTTGCCTACTCTCTATTCCTATTTTGAAACTGATAAGTTCTATTGTTTGGTTATGGAGTTTTGTAGTGGTGGTAATCTTCATTCTCTTCGACAAAAGCAACCTAATAAGTATTTTACAGAAGAAGCTGCCAGATTCTATGCATCGGAGGTTCTATTAGCACTGGAATACCTTCATATGTTAGGCATAGTCTATAGAGATTTGAAACCCGAAAATCTCTTAATCCGAGACGAAGGTCACATCATGCTCTCCGATTTCGATCTCTCTCTCCGCTGCTCCGTCAGCCCCACTCTTGTCAAATCCTCCTCCGTCAACGTCAACGGCAGCTCCGCCACCGGCAATACCGGCGCCAATGGCGGAGGCAGCGGTGGTATCCTCGACGACGAGTTCGTCGTCCACGGCTGTATGCAGCCTTCCAACTTCCTCCCTCGCATCCTCCCTTCCAAGAAGAACCGCAAGTCCAAATCCGACTTCGGCCTCTTCGTCGGCGGCTCCCTCCCTGAACTCATGGCCGAGCCTACCAACGTCAGATCTATGTCCTTCGTCGGCACTCACGAGTATCTCGCTCCGGAGATCATCCAAGGCGAAGGCCACGGCAGCGCCGTCGACTGGTGGACCTTCGGAATCTTCCTCTACGAGCTTCTCCACGGAACCACGCCTTTCAAAGGATCTGGAAATAGAGCTACTCTGTTCAACGTCGTCGAACAACCACTCAGATTCCCCGATGCGCCGCAAGTCAGTCTAGCCGCTAGAGATCTGATCAGAGGGCTCCTCGTCAAGGAGCCGCAAAAAAGAATCGCATATCGGAGAGGCGCAACTGAGATTAAACAGCATCCTTTCTTCGACGGAGTGAATTGGGCGTTGGTGAGAAGCGCTATGCCGCCGCACGTCCCGGAGCCGGTCGATTTCTCGCAGTTCGCTAGAAAGAAGAACTGCACCGGAGCGGCGGAAGACAAGAAACCGGTGGAAATACCGGCGGCTACGTCGTCGACCACGGCAACCCCGGCGGCGGCGGAGAATTCTTCGCCTTCTACTGGTAGCGATCCCAATTATGTGGATTTTGAGTACTTCTAG 1785 49.24 MLNYIHRRNLIGDRDLMQPLLVLSKSDNKYDGSEMFNNTSKGENDSHGGGMNVNAQNFVKNPPDSLRRIDQIAKNGINSGNPSSTVNAEIHSSQPGGSIAPIPTSTSATNLKNLNNNNNSNNNNSGFMATKGGGSGGNNYRCDSMETPGVVIKPHTGGDVRWDAINMVSKGGALNLSHFQLLKRLGYGDIGSVYLVELRGTDTFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNVNGSSATGNTGANGGGSGGILDDEFVVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVEQPLRFPDAPQVSLAARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPVDFSQFARKKNCTGAAEDKKPVEIPAATSSTTATPAAAENSSPSTGSDPNYVDFEYF 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3436219 3438333 - CaPI482276_04g001150.1 Cam04g0115 124193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0115 594 Pfam Protein kinase domain 367 518 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g0115 594 Pfam Protein kinase domain 180 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g0115 594 SUPERFAMILY Protein kinase-like (PK-like) 176 552 IPR011009 -
Cam04g0115 594 SMART serkin_6 179 518 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g0115 594 PANTHER FLIPPASE KINASE 1-RELATED 123 547 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cam04g0115 594 CDD STKc_phototropin_like 177 539 - -
Cam04g0115 594 FunFam Serine/threonine-protein kinase AGC1-5 177 262 - -
Cam04g0115 594 FunFam Serine/threonine-protein kinase AGC1-7 411 536 - -
Cam04g0115 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g0115 594 Gene3D Transferase(Phosphotransferase) domain 1 393 536 - -
Cam04g0115 594 ProSiteProfiles Protein kinase domain profile. 179 518 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g0115 594 FunFam serine/threonine-protein kinase D6PK-like 263 330 - -
Cam04g0115 594 MobiDBLite consensus disorder prediction 562 586 - -
Cam04g0115 594 Gene3D Phosphorylase Kinase; domain 1 177 262 - -
Cam04g0115 594 MobiDBLite consensus disorder prediction 551 594 - -
Cam04g0115 594 Gene3D Transferase(Phosphotransferase) domain 1 263 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0115 Cam-Chr4:3436219 Cam10g1296 Cam-Chr10:26438098 1.20E-147 dispersed
Cam04g0115 Cam-Chr4:3436219 Cam01g2175 Cam-Chr1:34435293 9.20E-151 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85096 PF00069 Pkinase 1.00E-21 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0115 - - - 0.0