Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0213 ATGGTTGGGACTACGCTTTTGGCCGACAATGATTTAGATCCAGAAGAAGACATTACGGTTGAAGCATGTGTAGGGATTTTGCTTCCTGACGAACACTATTGTGCTTGGGGTCGAACGACAACGATATATGTTCATTGGGCAGTTAGTACTGATGGTCAATTCTTAAGTTGGGCATATCGAATTACTTGGTGTATCAGGCGAGGATTAGAATGGCTGAATAATCTAAGAGCTGGTCTAGGTTTTTTAAATCTGTGCTGCATCACTGATATGATGGTTAAGGAAAATTTGCTGCAGAGAGTTGATGACAATGCTAAAGAGAATGATTGTTCGAGTATTGGGAATGAAGATTTGGGTTCTCAGTCTCGCCACAGTGTAGGGAAGGAATCTGGGGTCAGTTGTCGTGTGTGTCAATGTATTGAATCTGACAGAAGAGGTGATGCTGTTTTAGGATTTCTGGGCATCACTCCTCCAATTATGGAAGCAAGAAAATGTGATGGGGATTCTAAGCCTGAGAAGCAAAGTGCAGAAAATGTTTATGATGGTTCTGAGCTGAAAAAAGATGTTAAAGGGGATTCTGGTTCAATTAAGTTCATAGGCCCTAATGGGGAGGTTTTCATTTGCAAAGCTGATATCGAAATGGGTTCATGTCATCATGAAGATGTATTAGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCACTTGTACACTATGCATGTGCTCTCAAGTGGTTTGTCAGCCATGGATCTACAGTTTGTGAAATCTGTGGATGTACTGCAGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTGAGTTCTTTGAAAGAATATGAAGCTTTGAGGGAAAGAACTGTTAGTGGGGAACCTAATCCTATGCAGACTATTGCTGGTACCGATATAGATCCTGATGCTGTTGCTGCTGTCCGCAGGCAGCGGCTAAGTGAAATCTCATTGTGGTTCAGTCCTCATAATTATAGTAGCAACAATAACTCTACTGCAGCCTCCCAGGTTGTTTCTGAACATCTGAATACCATCTCAGAAAATGTTGTTCATTCCGAAAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACAGGGCTGCTTACTGTTACGCTTGCTTGCCTCATAGCTCCTCGTGTGGGGAAGAAAACTGCGAAAAGTGGCCTTCATATTCTTCTTGGAGGAGTTTGTGCGTTAACAGTTGTGGTTTTCTTCCGCTTTTTTGTGCTAACTAGGATAAAATATGGACCTGCACGATACTGGGCCATTTTGTTCGTCTTTTGGTTCCTGGTGTTTGGTATTTGGGCGTCGAGGACACATGCTGCTCATACGACGTAA 1356 42.77 MVGTTLLADNDLDPEEDITVEACVGILLPDEHYCAWGRTTTIYVHWAVSTDGQFLSWAYRITWCIRRGLEWLNNLRAGLGFLNLCCITDMMVKENLLQRVDDNAKENDCSSIGNEDLGSQSRHSVGKESGVSCRVCQCIESDRRGDAVLGFLGITPPIMEARKCDGDSKPEKQSAENVYDGSELKKDVKGDSGSIKFIGPNGEVFICKADIEMGSCHHEDVLVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCTAENIRTDDFRKVVSSLKEYEALRERTVSGEPNPMQTIAGTDIDPDAVAAVRRQRLSEISLWFSPHNYSSNNNSTAASQVVSEHLNTISENVVHSENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7588609 7597542 + CaPI482276_04g002130.1 Cam04g0213 124291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0213 451 Pfam RING-variant domain 222 256 IPR011016 GO:0008270(InterPro)
Cam04g0213 451 SUPERFAMILY RING/U-box 224 259 - -
Cam04g0213 451 PANTHER ZINC FINGER, RING-CH-TYPE 119 440 - -
Cam04g0213 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 266 IPR013083 -
Cam04g0213 451 ProSiteProfiles Zinc finger RING-CH-type profile. 199 263 IPR011016 GO:0008270(InterPro)
Cam04g0213 451 SMART ringv_2 216 257 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0213 Cam-Chr4:7588609 Cam11g0671 Cam-Chr11:8343860 6.00E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0213 - - - 0.0