Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0328 ATGGCGGATTACGATCTAACTCCCCGAATCGCGCCGAATCTGGACCGTCATCTTGTTTTCCCTCTCCTTGAGTTCCTTCAAGAGAGGCAGCTTTACCCCGATGAGCAGATCCTCAAGGCCAAAATCGAGCTTCTCAATAAGACCAACATGGTTGATTACGCCATGGACATCCACAAGTCACTCTACCACACTGACGATGTTCCTCAAGATATGGTGGACAGGAGGGCGGAAGTGGTTGCGAGGCTTAAGGCTTTGGAGGAGTCTGCAGCGCCACTTGTTGCTTTTCTGCAGAATCCGGCTGCGGTTCAGGAACTGAGGGCTGATAAGCAGTACAATCTTCAAATGCTTAATGATCGTTACCAGATTGGTCCAGATCAAATAGAAGCATTGTATCAATATGCCAAATTTCAGTTCGAGTGTGGGAACTATTCTGGTGCTGCTGACTATCTCTATCAGTACAGAGCCTTATGCACAAACAGTGAAAGGAGCCTGAGTGCTCTATGGGGAAAATTGGCAGCTGAGGTTTTAATGCAGAACTGGGATATTGCTGTTGAAGAGCTTAATCGTTTGAAGGAAATCATTGACTCTAAGAATTTTTCATCACCTATGAATCAAGTGCAAAGCAGAATATGGTTGATGCACTGGAGCCTCTTCATCTTTTTCAACCACGACAATGGAAGAACACAGATAATTGACCTGTTTAATCAAGATAAGTATTTAAATGCCATTCAAACCAATGCTCCACATCTTTTACGCTATTTGGCTACTGCATTCATCGTTAACAAAAGGCGGAGGCCACAATTCAAAGATTTTATCAAGGTTATTCAGCAAGAACAGAATTCCTATAAGGATCCTATCACAGAGTTTTTGACTTGTGTCTATGTCAATTATGATTTTGATGGGGCACAAAAGAAGATGAGAGAGTGTGAAGAAGTTATATTGAATGATCCTTTCCTAGGCAAGAGGCTTGAAGAAGGCAACCTTTCTACTGTCCCTTTGAGAGACGAGTTTTTGGAAAATGCTCGCCTTTTCATCTTTGAGACTTACTGCAGAATACATCAGCGCATTGATATGAATGTCCTTGCTGAGAAGTTGAACTTAAATTATGAGGAAGCTGAGAGGTGGATTGTTAATCTTGTTCGGACCTCAAAGCTCGATGCAAAGATTGATTCCAAGACAGGAACGGTTATAATGGAACCAAACCAGCCCAATGTATATGAAGAACTGATAGACCACACAAAATCATTATCTGGGCGTACTTACAAAAGCACTGAAGCAGAAGAACGCCTACGCCATTACGCCAGAACCTAA 1311 42.56 MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTDDVPQDMVDRRAEVVARLKALEESAAPLVAFLQNPAAVQELRADKQYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEVLMQNWDIAVEELNRLKEIIDSKNFSSPMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRECEEVILNDPFLGKRLEEGNLSTVPLRDEFLENARLFIFETYCRIHQRIDMNVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNVYEELIDHTKSLSGRTYKSTEAEERLRHYART 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11913418 11918305 - CaPI482276_04g003280.1 Cam04g0328 124406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0328 436 ProSiteProfiles PCI domain profile. 219 403 IPR000717 -
Cam04g0328 436 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
Cam04g0328 436 SUPERFAMILY TPR-like 120 193 IPR011990 GO:0005515(InterPro)
Cam04g0328 436 Gene3D - 224 426 - -
Cam04g0328 436 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 426 IPR016650 GO:0003743(InterPro)|GO:0005634(PANTHER)|GO:0005737(InterPro)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(PANTHER)
Cam04g0328 436 PIRSF Transl_init_eIF3e 1 435 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cam04g0328 436 SUPERFAMILY Winged helix DNA-binding domain 333 404 IPR036390 -
Cam04g0328 436 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 332 416 IPR000717 -
Cam04g0328 436 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 429 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cam04g0328 436 Pfam PCI domain 306 399 IPR000717 -
Cam04g0328 436 CDD eIF3E 4 429 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cam04g0328 436 SMART eIF3_N_2 5 137 IPR019010 -
Cam04g0328 436 FunFam Eukaryotic translation initiation factor 3 subunit E 228 431 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0328 K03250 - csv:101205199 846.269