Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0359 ATGGGAAGAGGAAGAGTCGAGATCAAGAAGATTGAGAATATCAACAGCAGACAAGTTACTTTCTCTAAACGCCGTAATGGGTTGATGAAAAAGGCCAAAGAATTATCAGTTCTTTGTGATGCTGAAGTCGCCATTGTTGTCTTCTCCAGCACTGGAAGGCTTTATGAATTCTCCAGCACTAGCATGGAACATACACTTTCAAGGTACAGAGGACAGGGCATGGAGTTGGATTTTCCAAAAGAGACTTTGGACCACCCAACACAACTGCCACCATCTGATTCTGATGCAAAGTCGTCTGAGGAGGAGATCGCAAGGCTAAAGTTAGCATATATGCAGATGAGAGGCCAGGAACTGGATAGTTTGAGCTTTATAGACCTACAAAACTTAGAAAATCAGTTGCGGGAAGGGATCGTATCTATCAAAGACAAGAAGGAGACATTACTTCTGGAGCAGCTCCAAAGGTGTAGGTCACAGCTAGAGGAGTTTCAGCAGAGAAACAATGCAACACTCCTGGAGTCCAGCCCCCTTCAGAGATCCTACCTTTCGGATTCGAAAACCGCTTCTACGAACGAGACTGAGGCTGAGACCGAGGCAGAGGAAAATGACCGCTCAGAAATTTCCTTGCATCTGGGGTTGTCATTGAATGGTCGACAAAAAAGGAAACGATCAGTTGAAGGTTTTGTTTTCGGCATTCTTGTTCAACCGAGTTCAGAGAATCATAGAGGTAGAGCCTTACTGCAATGA 744 44.76 MGRGRVEIKKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSSTSMEHTLSRYRGQGMELDFPKETLDHPTQLPPSDSDAKSSEEEIARLKLAYMQMRGQELDSLSFIDLQNLENQLREGIVSIKDKKETLLLEQLQRCRSQLEEFQQRNNATLLESSPLQRSYLSDSKTASTNETEAETEAEENDRSEISLHLGLSLNGRQKRKRSVEGFVFGILVQPSSENHRGRALLQ 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13003660 13007365 - CaPI482276_04g003590.1 Cam04g0359 124437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0359 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g0359 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam04g0359 247 SUPERFAMILY SRF-like 2 71 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g0359 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g0359 247 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cam04g0359 247 Gene3D - 13 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g0359 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g0359 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g0359 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g0359 247 ProSiteProfiles K-box domain profile. 89 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam04g0359 247 MobiDBLite consensus disorder prediction 173 204 - -
Cam04g0359 247 FunFam MADS-box transcription factor MADS-MC 13 82 - -
Cam04g0359 247 Coils Coil 96 116 - -
Cam04g0359 247 Pfam K-box region 100 167 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam04g0359 247 MobiDBLite consensus disorder prediction 173 191 - -
Cam04g0359 247 MobiDBLite consensus disorder prediction 81 100 - -
Cam04g0359 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g0359 247 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam04g0359 247 Coils Coil 126 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0359 Cam-Chr4:13003660 Cam10g1463 Cam-Chr10:28309209 4.70E-32 dispersed
Cam04g0359 Cam-Chr4:13003660 Cam01g2468 Cam-Chr1:36419336 6.80E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51735 PF01486 K-box 4.50E-11 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0359 - - - 0.0