Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam04g0359 | ATGGGAAGAGGAAGAGTCGAGATCAAGAAGATTGAGAATATCAACAGCAGACAAGTTACTTTCTCTAAACGCCGTAATGGGTTGATGAAAAAGGCCAAAGAATTATCAGTTCTTTGTGATGCTGAAGTCGCCATTGTTGTCTTCTCCAGCACTGGAAGGCTTTATGAATTCTCCAGCACTAGCATGGAACATACACTTTCAAGGTACAGAGGACAGGGCATGGAGTTGGATTTTCCAAAAGAGACTTTGGACCACCCAACACAACTGCCACCATCTGATTCTGATGCAAAGTCGTCTGAGGAGGAGATCGCAAGGCTAAAGTTAGCATATATGCAGATGAGAGGCCAGGAACTGGATAGTTTGAGCTTTATAGACCTACAAAACTTAGAAAATCAGTTGCGGGAAGGGATCGTATCTATCAAAGACAAGAAGGAGACATTACTTCTGGAGCAGCTCCAAAGGTGTAGGTCACAGCTAGAGGAGTTTCAGCAGAGAAACAATGCAACACTCCTGGAGTCCAGCCCCCTTCAGAGATCCTACCTTTCGGATTCGAAAACCGCTTCTACGAACGAGACTGAGGCTGAGACCGAGGCAGAGGAAAATGACCGCTCAGAAATTTCCTTGCATCTGGGGTTGTCATTGAATGGTCGACAAAAAAGGAAACGATCAGTTGAAGGTTTTGTTTTCGGCATTCTTGTTCAACCGAGTTCAGAGAATCATAGAGGTAGAGCCTTACTGCAATGA | 744 | 44.76 | MGRGRVEIKKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSSTSMEHTLSRYRGQGMELDFPKETLDHPTQLPPSDSDAKSSEEEIARLKLAYMQMRGQELDSLSFIDLQNLENQLREGIVSIKDKKETLLLEQLQRCRSQLEEFQQRNNATLLESSPLQRSYLSDSKTASTNETEAETEAEENDRSEISLHLGLSLNGRQKRKRSVEGFVFGILVQPSSENHRGRALLQ | 247 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 13003660 | 13007365 | - | CaPI482276_04g003590.1 | Cam04g0359 | 124437 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam04g0359 | 247 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam04g0359 | 247 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 190 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cam04g0359 | 247 | SUPERFAMILY | SRF-like | 2 | 71 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam04g0359 | 247 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam04g0359 | 247 | CDD | MADS_MEF2_like | 2 | 70 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cam04g0359 | 247 | Gene3D | - | 13 | 79 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam04g0359 | 247 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam04g0359 | 247 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam04g0359 | 247 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam04g0359 | 247 | ProSiteProfiles | K-box domain profile. | 89 | 180 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cam04g0359 | 247 | MobiDBLite | consensus disorder prediction | 173 | 204 | - | - | |
Cam04g0359 | 247 | FunFam | MADS-box transcription factor MADS-MC | 13 | 82 | - | - | |
Cam04g0359 | 247 | Coils | Coil | 96 | 116 | - | - | |
Cam04g0359 | 247 | Pfam | K-box region | 100 | 167 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cam04g0359 | 247 | MobiDBLite | consensus disorder prediction | 173 | 191 | - | - | |
Cam04g0359 | 247 | MobiDBLite | consensus disorder prediction | 81 | 100 | - | - | |
Cam04g0359 | 247 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam04g0359 | 247 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam04g0359 | 247 | Coils | Coil | 126 | 172 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam04g0359 | Cam-Chr4:13003660 | Cam10g1463 | Cam-Chr10:28309209 | 4.70E-32 | dispersed | |
Cam04g0359 | Cam-Chr4:13003660 | Cam01g2468 | Cam-Chr1:36419336 | 6.80E-31 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51735 | PF01486 | K-box | 4.50E-11 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam04g0359 | - | - | - | 0.0 |