Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0378 ATGGAGGTCGATACTAATTCTGGGAAACCGTCGAAACAGATTGGGGGTGGTCAGGTTTGTCAGATCTGCAGCGATTCCGTCGGCACGACGGCCGACGGCGAGCCGTTTGTTGCATGTGATGTTTGTGCATTTCCAGTCTGCCGTCCATGTTATGAGTACGAGAGGAAAGATGGGAATCAGTCTTGCCCTCAATGCAAGACCAAATACAAGTGGCATAAAGGAAGTCCTCCGGTTAATGGAGAGGCAGTGGAAGATGGTGATGGTAATGGAGTGGCAGGGGCTCAAGAAAGGCATCATAAGATGCCAGAGCGCACCCTTAGCTGGGATACTAATTATGATAAGGAAGGATCTTTTAATCACATTCCTTTGCTCACCACTGGACGATCTGTTTCTGGAGAACTCTCGGCTGCATCTCCTGAGCGGCTCTCCATGGCATCTCCCGAAAGTGGGAGCCGGGCTAACTATAGAATCATGGATCAATCGAGAGACTCGGGTTCGGCTAGATTTGGCAATGTGGCCTGGAAAGAGAGAATAGATAGTTGGAAGGTGAAGCAAGACAAGAGTGTGCCGCCAATGAGTGTCAGTCATGCACCTTCTGAAGGGAGGGGTGGAGCTGATTTTGATGCCAGCACTGATGTCGTGATCGATGATTCTTTACTAAATGATGAAGCTCGCCAGCCTTTGTCGAGGAAGGTTTCTATTCCATCCTCTAGGATTAATCCTTATAGGATGGTCATCGTTCTACGGCTTATTATTCTTTGCATCTTCTTGCACTATCGGATCACAAATCCAGTTCCAAATGCCTTTGCTCTGTGGTTAATATCAGTGATTTGTGAGATTTGGTTTGCTATATCTTGGATTTTGGATCAGTTCCCCAAGTGGCTCCCGGTCAATCGTGAGACATATCTTGATAGACTTGCTCTAAGATATGATCGTGAAGGAGAGCCATCTCAGTTGGCTGCTGTTGACATATTTGTCAGTACTGTCGACCCTCTGAAAGAACCACCCCTTGTCACAGCCAATACGGTCCTATCAATTCTCTCTGTGGACTATCCAGTCGATAAAGTTTCTTGCTATGTATCAGATGATGGAGCTGCCATGTTAACATTTGAAGCCTTATCCGAAACATCAGAATTTGCAAGAAAATGGGTTCCTTTCTGCAAGAAGTACAGCATTGAGCCAAGAGCACCAGAGTGGTATTTTGCTCAGAAGATTGATTACTTAAAGGACAAGGTTCAACCATCATTTGTAAAGGAACGGAGAGCAATGAAGAGAGAATATGAGGAGTTTAAAATTCGTATCAATGGACTTGTAGCTAAGGCTCAGAAAGTTCCAGATGAAGGGTGGGTCATGCAAGATGGTACGCCATGGCCTGGAAATAACACGAGAGATCATCCAGGAATGATACAGGTTTTCTTGGGGCATAGTGGAGGACTTGATACTGAGGGCAATGAGCTTCCACGTTTAGTTTATGTTTCTCGTGAGAAACGTCCTGGTTTCCAACATCACAAAAAGGCTGGTGCTATGAATGCACTTGTTCGTGTATCTGCTGTTCTTACCAACGGACCCTTCTTGTTAAATCTTGATTGTGATCACTACATAAACAACAGTAAAGCGTTGCGGGAAGCTATGTGTTTTATGATGGATCCTAATCTTGGTAAATCAGTTTGCTATGTTCAGTTTCCTCAGAGGTTTGATGGAATTGATAGAAATGATCGATATGCCAACCGAAACACTGTTTTCTTTGATATCAATCTTCGAGGCTTGGATGGTATCCAAGGTCCGGTGTATGTGGGAACGGGATGTGTTTTCAATCGAACTGCATTGTATGGCTATGAACCCCCTCTCAAGCCCAAGCATAAAAAGCCAGGGCTATTCTCCAGTTGCTTTGGGAAATCAAAAAAGAAAAGTTCTAAATCGAAAAGAAAGGATTCTGATAAGAAGCAAACTAGTAAAAATGTTGATCCCACCGTGCCAATATTCAACCTTGAAGATATTGAGGAAGGAGTTGAAGGTGCCGGGTTTGATGACGAGAAATCGCTACTAATGTCACAAATGAGCCTGGAGAAGAGGTTTGGTCAATCAGCTGTATTTGTTGCTTCCACACTAATGGAAAATGGTGGCGTGCCACAGTCTGCCACTCCGGAATCTCTCCTTAAAGAAGCAATTCATGTCATCAGTTGCGGATATGAGGATAAAACAGACTGGGGAAGTGAAATTGGATGGATCTATGGTTCTGTCACAGAAGATATTTTGACAGGGTTCAAGATGCATGCCCGTGGTTGGAGATCAATCTATTGCATCCCAGACCGTCCCGCATTTAAAGGATCTGCTCCCATTAATCTTTCTGATCGTCTTAACCAAGTGCTTCGGTGGGCGTTAGGTTCGGTTGAAATTCTTTTCAGTCGGCATTGCCCTATGTGGTACGGTTATGGTGGACGGTTGAAATGGCTCGAGAGATTTGCTTATGTTAACACCACCATTTATCCAATAACGTCCATTCCGCTTCTTGCCTATTGTACCTTACCTGCAATATGTCTGCTCACCGGAAAGTTTATTATTCCTCAGATCAGCAATCTTGCCAGCATCTGGTTCATATCGCTCTTTCTTTCCATCTTTGCTACTGGTATTCTGGAAATGAGATGGAGTGGTGTTGGAATCGATGAATGGTGGAGAAACGAGCAGTTCTGGGTTATTGGAGGTGTGTCGGCCCATCTTTTCGCTGTCTTCCAAGGTCTTCTTAAAGTTCTTGCTGGAATTGATACCAATTTCACGGTTACTTCGAAAGCATCTGACGAAGATGGAGATTTTGCTGAGCTCTACATGTTCAAGTGGACCACTCTTCTCATTCCCCCAACTACTCTCCTAATTATCAACATAGTTGGAGTTGTTGCTGGAATTTCTTATGCCATCAACAGTGGCTATCAGTCTTGGGGACCCCTTTTCGGCAAACTGTTCTTCGCTTTCTGGGTGATTATTCATCTGTATCCCTTCCTTAAGGGTCTGATGGGTCGCCAGAACCGAACCCCCACAATTGTGGTTGTATGGTCTATCCTCCTTGCCTCAATCTTCTCCCTTTTATGGGTTCGGATTGATCCCTTCACAACTCGGGTAACTGGTCCCGATGTGGAACAGTGTGGAATCAACTGCTAA 3153 44.69 MEVDTNSGKPSKQIGGGQVCQICSDSVGTTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPPVNGEAVEDGDGNGVAGAQERHHKMPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRIMDQSRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHAPSEGRGGADFDASTDVVIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLIILCIFLHYRITNPVPNAFALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQPSFVKERRAMKREYEEFKIRINGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLFSSCFGKSKKKSSKSKRKDSDKKQTSKNVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPDRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPMWYGYGGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14418618 14423990 + CaPI482276_04g003780.1 Cam04g0378 124456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0378 1050 ProSiteProfiles Zinc finger RING-type profile. 20 66 IPR001841 -
Cam04g0378 1050 SUPERFAMILY Nucleotide-diphospho-sugar transferases 336 852 IPR029044 -
Cam04g0378 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 93 IPR013083 -
Cam04g0378 1050 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 440 613 IPR029044 -
Cam04g0378 1050 FunFam Cellulose synthase 439 613 - -
Cam04g0378 1050 CDD mRING-HC-C4C4_CesA 18 68 - -
Cam04g0378 1050 Pfam Cellulose synthase 322 1043 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cam04g0378 1050 MobiDBLite consensus disorder prediction 623 655 - -
Cam04g0378 1050 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 230 1019 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cam04g0378 1050 SUPERFAMILY RING/U-box 7 87 - -
Cam04g0378 1050 Pfam Zinc-binding RING-finger 10 86 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0378 Cam-Chr4:14418618 Cam09g0410 Cam-Chr9:4447227 0.00E+00 dispersed
Cam04g0378 Cam-Chr4:14418618 Cam02g0928 Cam-Chr2:13097730 3.40E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0378 K10999 - csv:101211779 2118.58