Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0440 ATGGGTTCTTCTGTTGCTGCAATGGGCATGGTTTCAGACTCCAAATTCCATGTTCTTGCTGTTGATGATAGCGTTATCGATAGGAAATTGATTGAAAGGCTCCTTAAAACCTCCTCTTACCAAGTCACTACGGTTGATTCTGGAAGTAAAGCTTTGGAGTTTCTGGGATATGACCCCGGAAATAACTCGATTCCTTCTGTTTCATCTAACCATCATCATCATCATCAGGAAGTGGATGTGAATCTTGTTATTACTGATTACTGTATGCCTGAGATGACTGGCTATGATTTGTTGAAGAAGATCAAGGGATCTACAGCTCTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTGCCTGCAAGAATCAATAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCCGACTTTCGGATGTCAACCGGCTTAGACCCCACATGTTGAAAACCAAACTCAAATGTGACAAACCAGAAAAAGCAGTAGAAAATGAGCCTGATTCAGGAAGCCAATCCCAAGCACTAGAGCAACAACATCAACAACGACATGAACAAGAACAATTACGACCGCTATCGCAGCAGATCCCGACATCGCTGCAAGATCAAGATCAATTGCAATCTGTACCACTTCTGCCAACACCAACACAGGAGCAAGAACAGTTGCAATTACTCCCGCCAACACCGCCGCAACAATCAAACAACAACAAGAGGAAGGCAATGGAAGATGGACTTTCTCCCGATAGAACAAGGCCTAGATACAATGGTATTACCACCATGGTGTAG 795 43.14 MGSSVAAMGMVSDSKFHVLAVDDSVIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDPGNNSIPSVSSNHHHHHQEVDVNLVITDYCMPEMTGYDLLKKIKGSTALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKCDKPEKAVENEPDSGSQSQALEQQHQQRHEQEQLRPLSQQIPTSLQDQDQLQSVPLLPTPTQEQEQLQLLPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16531354 16532811 - CaPI482276_04g004400.1 Cam04g0440 124518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0440 264 MobiDBLite consensus disorder prediction 159 192 - -
Cam04g0440 264 MobiDBLite consensus disorder prediction 216 264 - -
Cam04g0440 264 SMART REC_2 16 149 IPR001789 GO:0000160(InterPro)
Cam04g0440 264 Gene3D - 17 249 - -
Cam04g0440 264 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 210 IPR045279 GO:0009736(InterPro)
Cam04g0440 264 CDD REC_typeA_ARR 18 148 - -
Cam04g0440 264 ProSiteProfiles Response regulatory domain profile. 17 153 IPR001789 GO:0000160(InterPro)
Cam04g0440 264 Pfam Response regulator receiver domain 18 144 IPR001789 GO:0000160(InterPro)
Cam04g0440 264 SUPERFAMILY CheY-like 14 153 IPR011006 -
Cam04g0440 264 MobiDBLite consensus disorder prediction 216 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0440 Cam-Chr4:16531354 Cam10g1583 Cam-Chr10:29562291 4.20E-55 dispersed
Cam04g0440 Cam-Chr4:16531354 Cam06g1813 Cam-Chr6:29205961 1.20E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51740 PF00072 Response_reg 1.30E-18 CL0304 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0440 K14492 - csv:101220999 434.876