Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0473 ATGTCTCTACCATTCGTTTCTCCCTTTTCTCCTGCTAGCATGATAAGGAGAGACGGATCCCAACTCAAAAATGTCGGCTCGATCATGTTTATATTGGCAGGAGGAGCCTACTGCTGGGGCTCTCGCTTCCCCTTCTCATCAGTCATCAGTTCTGTTTCTTTTTCCCGCCATTTCAAGCCTCGCCTAAGCCTTTGCTCTCTCCTTCACACACACTTCTTTTTTCGCTTTGTCACGATCTTAAATCTCCGAACACCGAAGAAGATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGACGTAGCACAGAATCTTAAGAAATTGGTTACAGAACAGGACTGCCCTCATTTGCTCTTCTATGGCCCCTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCCCTTATCCGGCAGATGTTCGGAGCCAGTGCGGATAAGGTGAAGGTGGAGAACAAAACGTGGAAAGTTGATGCTGGAGCTAGAACTATTGATATAGAGTTGACCACCTTATCAAGTACAAACCATGTCGAGCTCACTCCCAGCGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCAAAAAACAGACCAATTGACTCCAAAGGGAAAAGGGGGCATAAAGTGTTGGTTCTAAATGACGTCGACAAACTATCAAGAGAGGCCCAACACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATACTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGTTCTCGCTGCCTAAATGTGCGGATAAATGGACCAACAGAGGAGCAGATTGTCAGGGTACTTGAGTTCATTGGCAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGTATTGCAGAAAAATCAAATCGGAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTATCCTTTTGTCAGTACCCAGGCAATTCCACCGATGGATTGGGAGGAGTACATCACTGAGATAGCATCTGACATAATGAAGGAGCAGAGTCCCAAGAGACTATTCCAGGTTCGTGGGAAGGTATATGAGCTACTGGTTAATTGTATCCCTCCGGAGATCATATTGAAGAGGCTGCTTTATGAGCTACTCAAAAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACACAGGATGCGCCTTGGACAGAAAGCCATCTTCCACATTGAAGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACATTCGGCTAA 1326 44.49 MSLPFVSPFSPASMIRRDGSQLKNVGSIMFILAGGAYCWGSRFPFSSVISSVSFSRHFKPRLSLCSLLHTHFFFRFVTILNLRTPKKMLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGASADKVKVENKTWKVDAGARTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTEEQIVRVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSTQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKVYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17528269 17535663 + CaPI482276_04g004730.1 Cam04g0473 124551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0473 441 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 90 433 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cam04g0473 441 FunFam Replication factor C subunit 3 339 432 - -
Cam04g0473 441 Pfam Replication factor C subunit 3, C-terminal domain 340 429 - -
Cam04g0473 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 326 IPR027417 -
Cam04g0473 441 FunFam Replication factor C subunit 5 87 276 - -
Cam04g0473 441 Gene3D - 339 432 - -
Cam04g0473 441 SMART AAA_5 120 279 IPR003593 GO:0016887(InterPro)
Cam04g0473 441 SUPERFAMILY post-AAA+ oligomerization domain-like 338 433 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cam04g0473 441 FunFam replication factor C subunit 3 277 335 - -
Cam04g0473 441 Gene3D - 277 337 - -
Cam04g0473 441 Pfam RCF1/5-like, AAA+ ATPase lid domain 284 323 - -
Cam04g0473 441 Pfam DNA polymerase III, delta subunit 105 274 - -
Cam04g0473 441 CDD AAA 106 268 - -
Cam04g0473 441 Gene3D - 87 276 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2005 Cam-Chr1:33282938 Cam04g0473 Cam-Chr4:17528269 1.70E-65 dispersed
Cam04g0473 Cam-Chr4:17528269 Cam08g1021 Cam-Chr8:16430892 1.40E-23 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0473 K10756 - csv:101221072 667.537