Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0519 ATGATGTATTTTCTTTTGAAACAAAAGTGCTCCCTTGCCGATGAAGTACTCGTTGCTTTGCTGCTTCGATTTCTCTTCTTCCGGCGTCAATTTTTTGTGTTGATTCCGGCCAGTTACTGCTTCTTCTTGGTCGATTTCCAGAGATTAACCATGATTAATGCTATCAAGGCTGCGATCGGCGATGCCGTTCTCACTTCCATGTGGATTTTCTGTGCTTCGTCTCTTGGGGTTCTCACTTCCGTCCTGTCCTCGGCAGCCGGTGTTTATGGCCTTACGCTTCACCCGCTTCTTATCGTTACTACTCTTGTCTTCGTCCTTGTTTTCATTTTTAATATAATTGGTGCTGCTTTGGGTGGGGCTAGCTTTAATCCCACTGGTACTGCTGCTTTCTATGCTGCCGGCGTTGTTCCAACCTCTCTCTTCGCCATGGCTATCCGTTTCCCTGCTCAGGCAGCTGGTGCGGTTGCTGGTGCCCTGGCGATCAAGGAGGTGATGCCTATACAATACAAACACATGCTTGGTGGACCTTCTTTAAAAGTTGACATTCATTCTGGAGCTACAGCTGAAGGAATTTTGACCTTTATAATCAGTTTTGCTGTTCTTCTAATTGTAGTCAGGGGTCCTTCCAGCCCAATTATTAAAACATTGTTGCTGGCAATGACCACCGTAGCGTTAATTGTTGCTGGTTCTAGTTACACAGGACCTTCCATGAATCCTGCAAATGCGTTCGGATGGGCATATATAAACAACAGGCATGATACATGGGAGCAGTTGTACGTGTACTGGATCGCCCCCTTCATAGGAGCGATTTTGGCTGCTTGGCTTTTCAGAATCATCTTCCCACCACCACCCCCAGCCCCAGCCAAGCAGAAGAAAGCTTGA 882 46.94 MMYFLLKQKCSLADEVLVALLLRFLFFRRQFFVLIPASYCFFLVDFQRLTMINAIKAAIGDAVLTSMWIFCASSLGVLTSVLSSAAGVYGLTLHPLLIVTTLVFVLVFIFNIIGAALGGASFNPTGTAAFYAAGVVPTSLFAMAIRFPAQAAGAVAGALAIKEVMPIQYKHMLGGPSLKVDIHSGATAEGILTFIISFAVLLIVVRGPSSPIIKTLLLAMTTVALIVAGSSYTGPSMNPANAFGWAYINNRHDTWEQLYVYWIAPFIGAILAAWLFRIIFPPPPPAPAKQKKA 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18586301 18592291 - CaPI482276_04g005190.1 Cam04g0519 124597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0519 293 Gene3D Glycerol uptake facilitator protein. 47 285 IPR023271 -
Cam04g0519 293 FunFam Aquaporin SIP1-1 52 292 - -
Cam04g0519 293 PANTHER AQUAPORIN SIP1-1 51 292 IPR044222 GO:0015250(InterPro)
Cam04g0519 293 Pfam Major intrinsic protein 50 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0519 293 PRINTS Major intrinsic protein family signature 142 161 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0519 293 PRINTS Major intrinsic protein family signature 219 241 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0519 293 PRINTS Major intrinsic protein family signature 56 75 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0519 293 PRINTS Major intrinsic protein family signature 188 206 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0519 293 PRINTS Major intrinsic protein family signature 259 279 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0519 293 PRINTS Major intrinsic protein family signature 103 127 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0519 293 SUPERFAMILY Aquaporin-like 47 289 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0519 Cam-Chr4:18586301 Cam04g0825 Cam-Chr4:22513641 6.40E-12 dispersed
Cam04g0519 Cam-Chr4:18586301 Cam02g2184 Cam-Chr2:34570844 2.70E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0519 K09875 - csv:101220534 399.438