Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam04g0520 | ATGAACGACTTGATGACCAAATCGTTCACCAGCTATGTGGATCTGAAGAAGGCAGCCATGAAAGATCTCGACCTCGAAGCTGGTTTAGAAATGCCATCGTCCGCTACCGGAGACAACGGTGACATGGGTCTTTTTCTCGAAGAAGCTGAGAAGGTGAAAATGGAGATGGGTTCAATTAGAGAGATTTTAGTTAAACTCCAACAAGCTAATGAGGAGACCAAATCTGCTCACAAACCCGAAACTCTCAAATCGCTTCGTAATACGATCAATGTCGACATTGTCACCGTCCTGAAAAAGGCGCGATCGATCCGATCTCAGCTTGAGGAAATGGACCGTGCCAATGCTGCAAAGAAACGTCTTTCTGGCAGCAAAGAAGGCACTGCCATTTACCGGACGAGAATTGCGGTGACAAACGGGCTGCGGAAGAAGCTAAAGGAATTGATGATGGAGTTTCAGAGCTTGAGGCAGAGGATGATGACGGAGTACAAGGAAACGGTCGGGCGAAGGTATTTCACGGTGACGGGGGAGCATCCGGAGGAGGAGGTGATAGAGAAGATAATATCCAATGGAGGAGAGGAGTTTTTGGGGAGGGCGATAGAGGAGCACGGGCGGGGGAAAGTGGCGGAGACGGTGGTGGAGATACAAGACCGACACGGGGCGGCGAAGGAGATAGAGAAGAGTTTGCTAGAGCTACACCAAGTGTTTTTGGATATGGCAGTGATGGTTGAAGCACAAGGGGAAAAAATGGATGATATTGAACATCATGTGATGAATGCTTCACAATATGTTAGGGATGGGACTAAGGATTTGAAGACTGCAAAAGATTTGCAAAGGAACAGTAGGAAATGTATGTGTTTTGGGATTTTTCTTTTGCTTCTGATTATTTTGGTTGTTGTTATTCCTATTGCTGTTAGTTTTGGAAGTTCTTGA | 930 | 46.34 | MNDLMTKSFTSYVDLKKAAMKDLDLEAGLEMPSSATGDNGDMGLFLEEAEKVKMEMGSIREILVKLQQANEETKSAHKPETLKSLRNTINVDIVTVLKKARSIRSQLEEMDRANAAKKRLSGSKEGTAIYRTRIAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRRYFTVTGEHPEEEVIEKIISNGGEEFLGRAIEEHGRGKVAETVVEIQDRHGAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVMNASQYVRDGTKDLKTAKDLQRNSRKCMCFGIFLLLLIILVVVIPIAVSFGSS | 309 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 18600528 | 18601532 | + | CaPI482276_04g005200.1 | Cam04g0520 | 124598 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam04g0520 | 309 | CDD | SNARE_syntaxin1-like | 210 | 272 | - | - | |
| Cam04g0520 | 309 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 39 | 169 | - | - | |
| Cam04g0520 | 309 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 211 | 273 | IPR000727 | - | |
| Cam04g0520 | 309 | FunFam | Syntaxin 132 | 204 | 304 | - | - | |
| Cam04g0520 | 309 | SMART | SynN_4 | 37 | 163 | IPR006011 | GO:0016020(InterPro) | |
| Cam04g0520 | 309 | PANTHER | SYNTAXIN | 48 | 294 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
| Cam04g0520 | 309 | Gene3D | - | 37 | 166 | - | - | |
| Cam04g0520 | 309 | SUPERFAMILY | t-snare proteins | 41 | 266 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
| Cam04g0520 | 309 | Pfam | Syntaxin | 45 | 246 | IPR006011 | GO:0016020(InterPro) | |
| Cam04g0520 | 309 | SMART | tSNARE_6 | 206 | 273 | IPR000727 | - | |
| Cam04g0520 | 309 | CDD | SynN | 42 | 198 | IPR006011 | GO:0016020(InterPro) | |
| Cam04g0520 | 309 | ProSitePatterns | Syntaxin / epimorphin family signature. | 217 | 257 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
| Cam04g0520 | 309 | Pfam | SNARE domain | 248 | 299 | IPR000727 | - | |
| Cam04g0520 | 309 | Coils | Coil | 137 | 157 | - | - | |
| Cam04g0520 | 309 | Gene3D | - | 206 | 307 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam01g2004 | Cam-Chr1:33268374 | Cam04g0520 | Cam-Chr4:18600528 | 2.30E-56 | dispersed | |
| Cam04g0520 | Cam-Chr4:18600528 | Cam10g1787 | Cam-Chr10:31950722 | 1.10E-59 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam04g0520 | K08486 | - | csv:101220775 | 565.459 |