Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0578 ATGGCTTCAAGACAAGTTCTTCCCCAACAAATCAGAGGCGAGGCAGCGATCGGTGGAGGAAAACAGGCAAAGGGCGCAGCGGCGGCAGATGCTAGGAACCGCCGAGCATTGGGTGATATTGGGAATCTGGTAACTGTTCGAGGAGTTGACGCAAAGGCAAATCGTCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCTAATGCCCAAGCTGCTGCAAAAGCTGAAAACAATAAGAAACAAGTACCTGTTAATGTAGATGGGGCTGCTCCCATTCTTGATGCTGGTGTTATGGCTGTTAAGAAAGCAGGAGCTCCCAAGCCAGCACATAAGAAAGTTGCAATTAAACCGACATCGGAGGTTATCGAGATAAGCTCGGACACGGTCGAAAAAGTTAAAGCCAAGGAAGTCAAATGTGCAAACAAGAAAAAGGAAGGAGAAGGGCCCTCAAAGAAGAAAGCACAGACTCTCACTTCAGTCCTAACTGCTAGAAGCAAGGCTGCCTGTGGTGTAACCAAGAAACCTAAAGAGGAGATTTTTGATATTGATGCTGCAGATGTTGGTAATGAGTTGGCAGCAGTTGAATATGTTGAGGACATTTACACTTTCTATAAAGAAGCCGAGAATGAGAGCAGACCTCATGACTATATGGATTCACAACCTGAGATAAACTCGACCATGAGGGCTATTTTGGTGGATTGGTTGGTTGATGTCCACAACAAATTCGAACTTTCGCCCGAAACTTTCTACCTCACCATCAATATAATCGATCGATTCCTTGCGACAAAAATAGTTCCAAGAAGGGAATTGCAATTGGTGGGCATTGGAGCCATGCTTATAGCCTCCAAATATGAAGAAATTTGGGCGCCTGAGGTAAATGACTTTGTGTGTCTTTCGGATAGAGCTTACACTCATGAACAGATACTAGTGATGGAGAAAAAAATACTTGGCAAGTTGGAATGGACCTTGACTGTTCCTACACCCTACGTTTTCCTTGCTCGATTCATCAAGGCGTCCAAGGACTCCAATCACGAGATGGAAAATCTGGTTTATTTTCTGGCTGAACTTGGTATAATGCATTACAATACGGCAATGATGTATTGCCCGTCCATGATTGCCGCCTCGGCAGTCTATGCGGCTCGATGCACGCTAAAGAAAACCCCTGCTTGGGATGACACCCTCAAACTGCACACTGGTTTCTCAGAACCTCAGATAATTGACTGTGCAAAACTTCTGGTGGGGTTCCATGGGGTAGCAGAGAAGAACAAGCTTCAAGTAATATACCGAAAGTACTCGAGCTCCGAGCGTGGAGCGGTAGCGTTGCTTCAGCCAGCCAAAGCTCTGTTGGCTCCCAATGGTGGTGGTGTCCATTGA 1374 45.92 MASRQVLPQQIRGEAAIGGGKQAKGAAAADARNRRALGDIGNLVTVRGVDAKANRPITRSFCAQLLANAQAAAKAENNKKQVPVNVDGAAPILDAGVMAVKKAGAPKPAHKKVAIKPTSEVIEISSDTVEKVKAKEVKCANKKKEGEGPSKKKAQTLTSVLTARSKAACGVTKKPKEEIFDIDAADVGNELAAVEYVEDIYTFYKEAENESRPHDYMDSQPEINSTMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLATKIVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTHEQILVMEKKILGKLEWTLTVPTPYVFLARFIKASKDSNHEMENLVYFLAELGIMHYNTAMMYCPSMIAASAVYAARCTLKKTPAWDDTLKLHTGFSEPQIIDCAKLLVGFHGVAEKNKLQVIYRKYSSSERGAVALLQPAKALLAPNGGGVH 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19471980 19474258 + CaPI482276_04g005780.1 Cam04g0578 124656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0578 457 SMART cyclin_7 233 317 IPR013763 -
Cam04g0578 457 SMART cyclin_7 330 414 IPR013763 -
Cam04g0578 457 FunFam G2/mitotic-specific cyclin-1 314 440 - -
Cam04g0578 457 PANTHER CYCLINS 175 432 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cam04g0578 457 SUPERFAMILY Cyclin-like 188 323 IPR036915 -
Cam04g0578 457 Pfam Cyclin, C-terminal domain 326 444 IPR004367 -
Cam04g0578 457 CDD CYCLIN_AtCycB-like_rpt1 176 321 - -
Cam04g0578 457 Pfam Cyclin, N-terminal domain 199 323 IPR006671 -
Cam04g0578 457 SUPERFAMILY Cyclin-like 327 447 IPR036915 -
Cam04g0578 457 PIRSF Cyclin_A_B_D_E 1 454 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cam04g0578 457 Gene3D - 199 440 - -
Cam04g0578 457 Gene3D - 213 324 - -
Cam04g0578 457 SMART Cyclin_C_2 326 445 IPR004367 -
Cam04g0578 457 ProSitePatterns Cyclins signature. 228 259 IPR048258 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2334 Cam-Chr2:35930908 Cam04g0578 Cam-Chr4:19471980 2.10E-111 dispersed
Cam04g0578 Cam-Chr4:19471980 Cam11g1887 Cam-Chr11:31406877 2.20E-67 dispersed
Cam04g0578 Cam-Chr4:19471980 Cam05g1878 Cam-Chr5:27696219 2.40E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0578 K21777 - csv:101217210 753.436