Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0578 ATGGCTTCAAGACAAGTTCTTCCCCAACAAATCAGAGGCGAGGCAGCGATCGGTGGAGGAAAACAGGCAAAGGGCGCAGCGGCGGCAGATGCTAGGAACCGCCGAGCATTGGGTGATATTGGGAATCTGGTAACTGTTCGAGGAGTTGACGCAAAGGCAAATCGTCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCTAATGCCCAAGCTGCTGCAAAAGCTGAAAACAATAAGAAACAAGTACCTGTTAATGTAGATGGGGCTGCTCCCATTCTTGATGCTGGTGTTATGGCTGTTAAGAAAGCAGGAGCTCCCAAGCCAGCACATAAGAAAGTTGCAATTAAACCGACATCGGAGGTTATCGAGATAAGCTCGGACACGGTCGAAAAAGTTAAAGCCAAGGAAGTCAAATGTGCAAACAAGAAAAAGGAAGGAGAAGGGCCCTCAAAGAAGAAAGCACAGACTCTCACTTCAGTCCTAACTGCTAGAAGCAAGGCTGCCTGTGGTGTAACCAAGAAACCTAAAGAGGAGATTTTTGATATTGATGCTGCAGATGTTGGTAATGAGTTGGCAGCAGTTGAATATGTTGAGGACATTTACACTTTCTATAAAGAAGCCGAGAATGAGAGCAGACCTCATGACTATATGGATTCACAACCTGAGATAAACTCGACCATGAGGGCTATTTTGGTGGATTGGTTGGTTGATGTCCACAACAAATTCGAACTTTCGCCCGAAACTTTCTACCTCACCATCAATATAATCGATCGATTCCTTGCGACAAAAATAGTTCCAAGAAGGGAATTGCAATTGGTGGGCATTGGAGCCATGCTTATAGCCTCCAAATATGAAGAAATTTGGGCGCCTGAGGTAAATGACTTTGTGTGTCTTTCGGATAGAGCTTACACTCATGAACAGATACTAGTGATGGAGAAAAAAATACTTGGCAAGTTGGAATGGACCTTGACTGTTCCTACACCCTACGTTTTCCTTGCTCGATTCATCAAGGCGTCCAAGGACTCCAATCACGAGATGGAAAATCTGGTTTATTTTCTGGCTGAACTTGGTATAATGCATTACAATACGGCAATGATGTATTGCCCGTCCATGATTGCCGCCTCGGCAGTCTATGCGGCTCGATGCACGCTAAAGAAAACCCCTGCTTGGGATGACACCCTCAAACTGCACACTGGTTTCTCAGAACCTCAGATAATTGACTGTGCAAAACTTCTGGTGGGGTTCCATGGGGTAGCAGAGAAGAACAAGCTTCAAGTAATATACCGAAAGTACTCGAGCTCCGAGCGTGGAGCGGTAGCGTTGCTTCAGCCAGCCAAAGCTCTGTTGGCTCCCAATGGTGGTGGTGTCCATTGA 1374 45.92 MASRQVLPQQIRGEAAIGGGKQAKGAAAADARNRRALGDIGNLVTVRGVDAKANRPITRSFCAQLLANAQAAAKAENNKKQVPVNVDGAAPILDAGVMAVKKAGAPKPAHKKVAIKPTSEVIEISSDTVEKVKAKEVKCANKKKEGEGPSKKKAQTLTSVLTARSKAACGVTKKPKEEIFDIDAADVGNELAAVEYVEDIYTFYKEAENESRPHDYMDSQPEINSTMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLATKIVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTHEQILVMEKKILGKLEWTLTVPTPYVFLARFIKASKDSNHEMENLVYFLAELGIMHYNTAMMYCPSMIAASAVYAARCTLKKTPAWDDTLKLHTGFSEPQIIDCAKLLVGFHGVAEKNKLQVIYRKYSSSERGAVALLQPAKALLAPNGGGVH 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19471980 19474258 + CaPI482276_04g005780.1 Cam04g0578 124656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0578 457 SMART cyclin_7 233 317 IPR013763 -
Cam04g0578 457 SMART cyclin_7 330 414 IPR013763 -
Cam04g0578 457 FunFam G2/mitotic-specific cyclin-1 314 440 - -
Cam04g0578 457 PANTHER CYCLINS 175 432 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cam04g0578 457 SUPERFAMILY Cyclin-like 188 323 IPR036915 -
Cam04g0578 457 Pfam Cyclin, C-terminal domain 326 444 IPR004367 -
Cam04g0578 457 CDD CYCLIN_AtCycB-like_rpt1 176 321 - -
Cam04g0578 457 Pfam Cyclin, N-terminal domain 199 323 IPR006671 -
Cam04g0578 457 SUPERFAMILY Cyclin-like 327 447 IPR036915 -
Cam04g0578 457 PIRSF Cyclin_A_B_D_E 1 454 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cam04g0578 457 Gene3D - 199 440 - -
Cam04g0578 457 Gene3D - 213 324 - -
Cam04g0578 457 SMART Cyclin_C_2 326 445 IPR004367 -
Cam04g0578 457 ProSitePatterns Cyclins signature. 228 259 IPR048258 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0578 K21777 - - csv:101217210 753.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2334 Cam-Chr2:35930908 Cam04g0578 Cam-Chr4:19471980 2.10E-111 dispersed
Cam04g0578 Cam-Chr4:19471980 Cam11g1887 Cam-Chr11:31406877 2.20E-67 dispersed
Cam04g0578 Cam-Chr4:19471980 Cam05g1878 Cam-Chr5:27696219 2.40E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g490 . Blo12g00623 . Bda03g00583 . . . . . . . . . . Sed14g0044 . . Bhi03g02515 Tan03g0519 Cmetu05g0055 . Hepe04g0519 . . Cla04g00589 Cam04g0578 Cec04g0653 Cco04g0704 Clacu04g0627 Cmu04g0623 Cre04g0641 Cone3ag0499 Cone10ag0468 . . . Csa04g01909 Chy08g00239 . . . . . Bpe04g00534 Bpe02g00023 . . . . Cmo07g01148 . . . . . Cpe19g00247 . . . . . . . . . . . . . . . . . Cme08g01425
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g2367 . 1 294 Core Cell Cycle Gene Families AT3G48750 85.7 2.1e-151 531.9
Cam04g0610 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 9.4e-96 347.1
Cam11g1918 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.0 3.3e-93 338.6
Cam04g0610 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 4.7e-154 540.8
Cam11g1918 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.0 9.2e-118 420.2
Cam05g2367 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 1.7e-92 336.3
Cam04g0610 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 2.6e-123 438.3
Cam11g1918 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.5 2.8e-93 338.6
Cam11g1918 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 2.3e-156 548.5
Cam04g0610 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 9.3e-118 420.2
Cam05g2367 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 9.4e-94 340.5
Cam11g1918 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 4.4e-160 560.8
Cam04g0610 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 3.4e-120 428.3
Cam05g2367 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.7 5.3e-97 351.3
Cam02g2482 . 57 571 Core Cell Cycle Gene Families AT5G10270 75.5 1.0e-219 759.6
Cam10g1268 . 23 484 Core Cell Cycle Gene Families AT5G10270 77.3 1.7e-209 725.7
Cam03g1660 . 113 431 Core Cell Cycle Gene Families AT5G10270 51.6 1.0e-97 354.4
Cam08g0065 . 137 453 Core Cell Cycle Gene Families AT5G10270 53.3 1.7e-97 353.6
Cam05g1097 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.3e-97 353.2
Cam05g0674 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.9 3.8e-97 352.4
Cam03g0395 . 93 409 Core Cell Cycle Gene Families AT5G10270 53.2 1.1e-96 350.9
Cam11g0058 . 150 466 Core Cell Cycle Gene Families AT5G10270 52.1 4.2e-96 349.0
Cam02g1825 . 193 509 Core Cell Cycle Gene Families AT5G10270 52.3 2.3e-94 343.2
Cam02g1691 . 683 1001 Core Cell Cycle Gene Families AT5G10270 51.0 5.2e-94 342.0
Cam04g1236 . 119 437 Core Cell Cycle Gene Families AT5G10270 50.1 1.4e-91 334.0
Cam02g1824 . 128 444 Core Cell Cycle Gene Families AT5G10270 50.6 2.4e-91 333.2
Cam02g2482 . 121 570 Core Cell Cycle Gene Families AT5G64960 72.7 8.1e-179 623.6
Cam10g1268 . 87 537 Core Cell Cycle Gene Families AT5G64960 71.2 2.5e-172 602.1
Cam05g1097 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.1e-81 300.1
Cam03g0395 . 147 409 Core Cell Cycle Gene Families AT5G64960 52.9 4.6e-81 298.9
Cam02g1825 . 247 509 Core Cell Cycle Gene Families AT5G64960 53.2 7.8e-81 298.1
Cam03g1660 . 167 431 Core Cell Cycle Gene Families AT5G64960 50.7 7.8e-81 298.1
Cam08g0065 . 191 453 Core Cell Cycle Gene Families AT5G64960 53.6 1.0e-80 297.7
Cam11g0058 . 204 466 Core Cell Cycle Gene Families AT5G64960 52.9 1.0e-80 297.7
Cam02g1824 . 182 444 Core Cell Cycle Gene Families AT5G64960 53.2 2.3e-80 296.6
Cam05g0674 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.8 3.9e-80 295.8
Cam06g1591 . 4 414 Core Cell Cycle Gene Families AT1G73690 74.0 3.7e-172 601.3
Cam06g1591 . 12 342 Core Cell Cycle Gene Families AT1G66750 77.7 2.1e-155 545.4
Cam06g1591 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.5 3.9e-174 607.8
Cam04g0113 . 32 484 Core Cell Cycle Gene Families AT5G63610 78.0 7.0e-202 700.3
Cam11g0316 . 1 481 Core Cell Cycle Gene Families AT4G28980 62.4 2.0e-175 612.5
Cam08g1030 . 5 498 Core Cell Cycle Gene Families AT1G44110 56.8 2.6e-145 512.3
Cam09g0235 . 225 503 Core Cell Cycle Gene Families AT1G44110 55.2 1.3e-88 323.9
Cam05g1878 . 206 472 Core Cell Cycle Gene Families AT1G44110 55.4 1.5e-84 310.5
Cam05g2238 . 340 619 Core Cell Cycle Gene Families AT1G44110 52.5 1.4e-82 303.9
Cam08g2100 . 85 373 Core Cell Cycle Gene Families AT1G44110 50.2 1.6e-78 290.4
Cam08g1748 . 314 575 Core Cell Cycle Gene Families AT1G44110 53.4 1.7e-75 280.4
Cam09g0235 . 224 499 Core Cell Cycle Gene Families AT1G77390 51.4 3.0e-77 286.2
Cam05g1878 . 206 472 Core Cell Cycle Gene Families AT1G77390 52.4 2.8e-75 279.6
Cam05g2238 . 345 617 Core Cell Cycle Gene Families AT1G77390 50.5 2.0e-73 273.5
Cam08g1748 . 314 571 Core Cell Cycle Gene Families AT1G77390 50.8 1.2e-67 254.2
Cam05g1878 . 16 484 Core Cell Cycle Gene Families AT5G25380 53.7 5.3e-119 424.9
Cam08g1748 . 147 587 Core Cell Cycle Gene Families AT5G25380 51.6 7.0e-103 371.3
Cam09g0235 . 223 503 Core Cell Cycle Gene Families AT5G25380 63.7 5.6e-100 361.7
Cam08g1030 . 216 491 Core Cell Cycle Gene Families AT5G25380 55.1 4.4e-81 298.9
Cam05g2238 . 344 612 Core Cell Cycle Gene Families AT5G25380 52.0 2.8e-75 279.6
Cam02g0694 . 119 344 Core Cell Cycle Gene Families AT5G25380 51.9 1.4e-58 224.2
Cam05g1878 . 3 422 Core Cell Cycle Gene Families AT5G11300 50.8 1.5e-94 343.6
Cam08g1030 . 207 436 Core Cell Cycle Gene Families AT5G11300 55.7 1.8e-68 256.9
Cam05g2238 . 340 556 Core Cell Cycle Gene Families AT5G11300 55.3 7.3e-62 235.0
Cam08g2100 . 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 3.1e-60 229.6
Cam02g0694 . 119 286 Core Cell Cycle Gene Families AT5G11300 52.1 6.4e-42 168.7
Cam09g0235 . 189 503 Core Cell Cycle Gene Families AT1G15570 65.0 2.7e-118 422.5
Cam08g1030 . 188 495 Core Cell Cycle Gene Families AT1G15570 52.1 3.4e-81 299.3
Cam02g0694 . 119 348 Core Cell Cycle Gene Families AT1G15570 51.1 7.0e-58 221.9
Cam09g0235 . 4 503 Core Cell Cycle Gene Families AT1G80370 51.4 2.5e-119 426.0
Cam08g1030 . 217 496 Core Cell Cycle Gene Families AT1G80370 55.7 1.6e-81 300.4
Cam05g2238 . 340 617 Core Cell Cycle Gene Families AT1G80370 51.4 9.0e-77 284.6
Cam08g2100 . 92 370 Core Cell Cycle Gene Families AT1G80370 52.0 2.2e-75 280.0
Cam02g0694 . 119 349 Core Cell Cycle Gene Families AT1G80370 51.7 6.0e-57 218.8
Cam08g2100 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.5 8.2e-115 410.6
Cam05g2238 . 245 620 Core Cell Cycle Gene Families AT5G43080 56.9 2.2e-112 402.5
Cam08g1030 . 218 498 Core Cell Cycle Gene Families AT5G43080 51.2 2.5e-79 292.7
Cam05g1878 . 208 477 Core Cell Cycle Gene Families AT5G43080 53.7 5.6e-79 291.6
Cam09g0235 . 226 503 Core Cell Cycle Gene Families AT5G43080 51.3 5.8e-76 281.6
Cam08g1748 . 311 589 Core Cell Cycle Gene Families AT5G43080 50.4 3.5e-73 272.3
Cam08g2100 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.4 6.0e-124 441.0
Cam05g2238 . 245 620 Core Cell Cycle Gene Families AT1G47210 54.4 1.4e-112 403.3
Cam09g0235 . 226 498 Core Cell Cycle Gene Families AT1G47210 51.8 7.2e-77 284.6
Cam05g1878 . 208 477 Core Cell Cycle Gene Families AT1G47210 52.2 1.2e-76 283.9
Cam08g1748 . 311 577 Core Cell Cycle Gene Families AT1G47210 50.6 7.8e-71 264.6
Cam05g2238 . 340 621 Core Cell Cycle Gene Families AT1G47220 59.2 4.0e-95 345.1
Cam08g2100 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.9 6.3e-93 337.8
Cam05g1878 . 208 474 Core Cell Cycle Gene Families AT1G47220 51.7 6.2e-72 268.1
Cam05g2238 . 245 620 Core Cell Cycle Gene Families AT1G47230 57.3 3.5e-116 415.2
Cam08g2100 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.4 5.1e-115 411.4
Cam02g0694 . 66 352 Core Cell Cycle Gene Families AT1G47230 54.0 1.9e-77 286.6
Cam08g1030 . 219 500 Core Cell Cycle Gene Families AT1G47230 50.5 1.2e-76 283.9
Cam09g0235 . 228 498 Core Cell Cycle Gene Families AT1G47230 52.0 1.3e-73 273.9
Cam05g1878 . 209 474 Core Cell Cycle Gene Families AT1G47230 52.0 2.4e-72 269.6
Cam04g0578 . 1 449 Core Cell Cycle Gene Families AT4G37490 53.8 1.2e-115 413.7
Cam04g0578 . 1 342 Core Cell Cycle Gene Families AT5G06150 53.6 4.0e-82 302.0
Cam02g2334 . 806 1008 Core Cell Cycle Gene Families AT5G06150 63.2 4.9e-64 241.9
Cam01g2139 . 170 344 Core Cell Cycle Gene Families AT5G06150 54.3 1.0e-45 181.0
Cam04g0578 . 6 406 Core Cell Cycle Gene Families AT3G11520 57.6 3.8e-105 378.6
Cam01g2139 . 171 397 Core Cell Cycle Gene Families AT3G11520 52.4 6.8e-62 235.0
Cam02g2334 . 718 1114 Core Cell Cycle Gene Families AT2G26760 52.6 1.4e-107 386.7
Cam01g2139 . 8 440 Core Cell Cycle Gene Families AT2G17620 60.0 4.7e-128 454.9
Cam11g1887 . 167 566 Core Cell Cycle Gene Families AT2G17620 52.0 5.6e-105 378.3
Cam01g2139 . 24 397 Core Cell Cycle Gene Families AT4G35620 58.7 2.1e-103 372.9
Cam11g1887 . 160 523 Core Cell Cycle Gene Families AT4G35620 53.4 7.6e-90 327.8
Cam02g2334 . 841 1067 Core Cell Cycle Gene Families AT4G35620 50.9 4.0e-54 209.1
Cam11g1887 . 131 566 Core Cell Cycle Gene Families AT1G20610 63.6 8.8e-143 503.8
Cam01g2139 . 1 440 Core Cell Cycle Gene Families AT1G20610 57.0 2.9e-122 435.6
Cam11g1887 . 131 463 Core Cell Cycle Gene Families AT1G76310 63.5 8.3e-104 374.0
Cam01g2139 . 1 336 Core Cell Cycle Gene Families AT1G76310 53.5 6.8e-82 301.2
Cam04g0578 . 177 343 Core Cell Cycle Gene Families AT1G76310 52.1 2.0e-41 166.8
Cam02g2334 . 837 1004 Core Cell Cycle Gene Families AT1G76310 52.4 5.8e-41 165.2
Cam09g2102 . 13 330 Core Cell Cycle Gene Families AT1G70210 65.6 3.1e-111 398.7
Cam05g2700 . 1 327 Core Cell Cycle Gene Families AT1G70210 63.3 4.4e-105 378.3
Cam01g1891 . 41 335 Core Cell Cycle Gene Families AT2G22490 54.9 3.9e-83 305.4
Cam05g1186 . 14 335 Core Cell Cycle Gene Families AT4G34160 51.1 4.1e-80 295.4
Cam08g2089 . 47 322 Core Cell Cycle Gene Families AT4G34160 50.2 1.2e-66 250.8
Cam02g0660 . 59 292 Core Cell Cycle Gene Families AT4G34160 52.6 2.5e-61 233.0
Cam05g2226 . 347 594 Core Cell Cycle Gene Families AT5G67260 51.4 9.0e-65 244.6
Cam01g1891 . 56 275 Core Cell Cycle Gene Families AT5G65420 60.3 1.1e-69 260.4
Cam08g1609 . 131 330 Core Cell Cycle Gene Families AT5G65420 55.9 5.3e-61 231.5
Cam01g1891 . 54 233 Core Cell Cycle Gene Families AT5G10440 59.1 7.2e-56 214.2
Cam08g1609 . 126 304 Core Cell Cycle Gene Families AT5G10440 53.9 9.1e-51 197.2
Cam01g1694 . 1 277 Core Cell Cycle Gene Families AT5G27620 67.1 4.3e-104 374.8
Cam01g1361 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 7.2e-44 172.9
Cam02g2241 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.0e-42 169.1
Cam01g1361 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.4e-39 158.7
Cam02g2241 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 3.9e-39 157.1
Cam05g2894 . 300 1318 Core Cell Cycle Gene Families AT3G12280 71.9 0.0e+00 1411.4
Cam09g0605 . 2 484 Core Cell Cycle Gene Families AT1G02970 60.2 2.0e-159 559.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001137 2 4 2 5 2 1 1 2 1 3 2 1 5 2 2 3 1 3 3 2 2 2 1 2 2 1 2 11 4 3 77