Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0579 ATGAGGGAAGAACACTCGAATTGGTTCTCTAGGTGGGAAGAGGAGCTTCCATCTCCAGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATAGCAGTCCGCCGTTGCCTTGTCCATCTCCGCCGCTTTCGAATCCTCTGCCTGGCTCTGGCAACGGAATTGCGCAGCCCAACTCGGCGGATTTCGGCGATTCTGCCGATTTGGGCTCCGGCGCCGCCAGCGACGAGCCGGCTCGGACCCTCAAGCGACCACGCCTTGTTTGGACGCCTCAGCTCCACAAGCGATTCGTCGATGCTGTTGCTCATTTAGGGATAAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCCGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGGATGCAGGGGTTGTCCTCCGGCGGCGGCGGTGGTGGTGGTGGCTTGGTTGCTTCCTCCGATCCCGCCACTGACCATTTGTTTGCTAGCTCCCCAGTTCCACCCCATTTGCTTCACTCTGCTCGCACCAGTTCAGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTGCAGCAGCACCACCATCACCAGCAGCAGATGGCCGCCGCTGCTGCTGTCGCCGTCCATCCGCAGCTCCAGCCGCCTTATCATCGGCAGGTCGGGCATTTCGGGTCACCGCCGAATGGCCAGTTTGAGCATCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGAGCACCAGTGCCTAATTCAGTTCCTAATTACATAGAGGATTTGGAATCAGCCAATGCCAGTGGAGGAAGAAAAGTTCTCACCTTATTTCCTACTGGGGATGATTGA 906 54.86 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNSSPPLPCPSPPLSNPLPGSGNGIAQPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGGGGLVASSDPATDHLFASSPVPPHLLHSARTSSDHFLPFVPMATLQQHHHHQQQMAAAAAVAVHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVPNSVPNYIEDLESANASGGRKVLTLFPTGDD 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19485636 19486541 + CaPI482276_04g005790.1 Cam04g0579 124657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0579 301 Gene3D - 94 156 - -
Cam04g0579 301 MobiDBLite consensus disorder prediction 1 91 - -
Cam04g0579 301 MobiDBLite consensus disorder prediction 1 18 - -
Cam04g0579 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Cam04g0579 301 FunFam Two-component response regulator 93 156 - -
Cam04g0579 301 Pfam Myb-like DNA-binding domain 100 149 IPR001005 -
Cam04g0579 301 MobiDBLite consensus disorder prediction 46 60 - -
Cam04g0579 301 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677(InterPro)
Cam04g0579 301 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 5 256 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0579 301 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2065 Cam-Chr2:33573930 Cam04g0579 Cam-Chr4:19485636 9.90E-29 dispersed
Cam03g0128 Cam-Chr3:2173440 Cam04g0579 Cam-Chr4:19485636 9.20E-39 dispersed
Cam04g0579 Cam-Chr4:19485636 Cam06g0476 Cam-Chr6:6887947 3.50E-21 dispersed
Cam10g1619 Cam-Chr10:29973574 Cam04g0579 Cam-Chr4:19485636 4.30E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51750 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0579 - - - 0.0