Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam04g0579 | ATGAGGGAAGAACACTCGAATTGGTTCTCTAGGTGGGAAGAGGAGCTTCCATCTCCAGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATAGCAGTCCGCCGTTGCCTTGTCCATCTCCGCCGCTTTCGAATCCTCTGCCTGGCTCTGGCAACGGAATTGCGCAGCCCAACTCGGCGGATTTCGGCGATTCTGCCGATTTGGGCTCCGGCGCCGCCAGCGACGAGCCGGCTCGGACCCTCAAGCGACCACGCCTTGTTTGGACGCCTCAGCTCCACAAGCGATTCGTCGATGCTGTTGCTCATTTAGGGATAAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCCGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGGATGCAGGGGTTGTCCTCCGGCGGCGGCGGTGGTGGTGGTGGCTTGGTTGCTTCCTCCGATCCCGCCACTGACCATTTGTTTGCTAGCTCCCCAGTTCCACCCCATTTGCTTCACTCTGCTCGCACCAGTTCAGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTGCAGCAGCACCACCATCACCAGCAGCAGATGGCCGCCGCTGCTGCTGTCGCCGTCCATCCGCAGCTCCAGCCGCCTTATCATCGGCAGGTCGGGCATTTCGGGTCACCGCCGAATGGCCAGTTTGAGCATCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGAGCACCAGTGCCTAATTCAGTTCCTAATTACATAGAGGATTTGGAATCAGCCAATGCCAGTGGAGGAAGAAAAGTTCTCACCTTATTTCCTACTGGGGATGATTGA | 906 | 54.86 | MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNSSPPLPCPSPPLSNPLPGSGNGIAQPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGGGGLVASSDPATDHLFASSPVPPHLLHSARTSSDHFLPFVPMATLQQHHHHQQQMAAAAAVAVHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVPNSVPNYIEDLESANASGGRKVLTLFPTGDD | 301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 19485636 | 19486541 | + | CaPI482276_04g005790.1 | Cam04g0579 | 124657 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam04g0579 | 301 | Gene3D | - | 94 | 156 | - | - | |
Cam04g0579 | 301 | MobiDBLite | consensus disorder prediction | 1 | 91 | - | - | |
Cam04g0579 | 301 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cam04g0579 | 301 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 102 | 153 | IPR017930 | - | |
Cam04g0579 | 301 | FunFam | Two-component response regulator | 93 | 156 | - | - | |
Cam04g0579 | 301 | Pfam | Myb-like DNA-binding domain | 100 | 149 | IPR001005 | - | |
Cam04g0579 | 301 | MobiDBLite | consensus disorder prediction | 46 | 60 | - | - | |
Cam04g0579 | 301 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 98 | 150 | IPR006447 | GO:0003677(InterPro) | |
Cam04g0579 | 301 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 5 | 256 | IPR044841 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam04g0579 | 301 | SUPERFAMILY | Homeodomain-like | 94 | 154 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g2065 | Cam-Chr2:33573930 | Cam04g0579 | Cam-Chr4:19485636 | 9.90E-29 | dispersed | |
Cam03g0128 | Cam-Chr3:2173440 | Cam04g0579 | Cam-Chr4:19485636 | 9.20E-39 | dispersed | |
Cam04g0579 | Cam-Chr4:19485636 | Cam06g0476 | Cam-Chr6:6887947 | 3.50E-21 | dispersed | |
Cam10g1619 | Cam-Chr10:29973574 | Cam04g0579 | Cam-Chr4:19485636 | 4.30E-106 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51750 | PF00249 | Myb_DNA-binding | 2.20E-08 | CL0123 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam04g0579 | - | - | - | 0.0 |