Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0624 ATGGACCAGCTTATCAGTTGGACTAAGGGAGATCCTTGCACAGATAATTGGATTGGAGTAGTATGCAGCTATTCTGATGGAGCTGTCAGGAACTTACGTGTCAAAGAACTCCAGCTATTGTACATGGACCTATCTGGAAAGTTAGCCCCTGAGATCAGCCAACTGTCCGTGCTTGAGAAGTTAAATTTCATGTGGAATAACCTAACTGGTTCAATTCCAAAGGAGATTGGCAGTATTTTGTCGCTGAAACTTTTACTCCTAAATGGAAATAAACTATCTGGTTCTCTTCCGGATGAGCTTGGTAATCTTACAAATCTCAACCGGTTCCAAGTAGATCAGAATCAAATTTCTGGGCCTATCCCAAAATCATATGCCAACTTGATCCGTGTGAAGCACCTCCACTTCAATAACAACACACTAAGTGGTGAAATTCCATCTGAGCTTTCCAAATTACCCAAGCTTATTCACTTGCTTTTGGATAACAATAACTTGTCGGGTTCGCTGCCACCAGAATTTTCGACCTTGCCAATGCTACACATTCTGCAACTTGATAATAACAACTTCGAAGGTGAAATTCCGGCATCTTATGAAAATTTTCCTAAATTAGTGAAATTAAGTCTGAGGAATTGTGGCTTGGAGGGACCGATTCCTAATTTTAGCAAGATAGCAAACCTCAGTTACTTAGATCTTAGCTGGAACCATTTTACTGGACCCATGCCACCTTATAACCTCTCTTCTAGGATGACAACAATAATTTTGTCGAACAACCAGCTGAATGGATCTATACCCAGAAGTTTCTCCAATCTTCCTATCCTCCAGAAACTGTCACTTGAGAATAATTTTCTGAATGGTTCTGTACCTTCTGCTCTATGGGAGACAATGTCCTTCGAATCAAGTGCTCGACTTACACTCGATCTTCGGAACAATTCGTTCTTTGACATTTCTGGAAGCACAAACCCTCCTGCTAATGTCACCCTAAGGCTTGGAGGAAATCCAATCTGCCAAAATTTGAGCGGACAAAACTCTGACCAGTTCTGTACATCAAAAATGGTAGTGGATGGGCTTCATACAAGCTCAAGGAATTCCAGTAAAACATGTCCGGTTAGCAGTTGTCCAACGGACAGTTTCTTTGAATTAGTGCCAGACACTCCTGACCCATGCTTTTGTGCATCACCCCTTGGGATTGGATATAGGCTGAAGAGTCCAAGTTTTTCCTACTTTCCTCCATACATGCATTTATTTGAAGTGTATCTGACAAAGGAACTCGGTTTGAATAAGCACCAATTGTTAATCGATTCATACGATTGGGAAGGAGCTCGCCTGAGGATGTATCTGAAGCTTTTTCCATCATTTGATAGTGGCACTCATAAATTGGATATAACTGAGATATTTCTCATTACAGAACAATTTATGTCATGGAATTTTACCCCAAATGACGTGTTTGGCCCATACGAGCTTCTCAACTTCACACTCCCTGACCGTTTTCAGACTGTCATTTTCGAGACAGAGAAGATGGGCATTAGTACAGGCATCCTGGCAGCCATTATAGTTGGATCTGTTTTTTGTGTTCTTTTGATCGTAGCAGTAACCGTACTTCTAGTCACTAGGCATTCTAGATACCATCAGGTTTTGTCAAGGAAAAATCTCTCTTCAACGATTGGTCTGAAAATTGATGGTGTAAAAGCATTTTCATTCAAAGAAGTGCAATTGGCTACTGGAAATTTCAACCGCTCAACTCAAGTTGGCCAAGGTGGTTATGGCAAGGTCTATAAAGGCATACTATCAGATAATTCAGTTGTAGCCATCAAGCGTGCAGAAGAAGGATCTTTACAAGGCCAAAAAGAATTTTTGACGGAGATAAAACTCTTATCACGATTGCATCACCGAAACTTAGTATCCCTAATCGGATATTGTGATGAAGAAGGGGAACAAATGCTGGTTTACGAGTTTATGCCGAATGGAACTTTGCGGGACTGGCTTTCTGGTTTTGAGTTTTCTGACAAAAGTAACACTACAGTAAATCTGAATTTTCGTATGAGACTACAAATTGCACTGGGTTCAGCTAAAGGTATACTGTATCTCCACACTGAAGCAAATCCTCCTATATTTCACCGAGACATCAAAGCTAGAAACATACTCCTCGATGCCAAGTTCACGGCCAAAGTGGCTGATTTTGGATTGTCACGTCTTGCTCCTGATCTGGATTTCGAGGGGGATGTTCCTGGACATATATCTACTGTCGTGAAGGGTACCCCTGGTTATCTTGATCCAGAGTACTTCTTAACCCGTAAACTGACAGACAAAAGTGATGTCTATAGCTTAGGAGTTGTGTTCTTGGAGCTCTTGACGGGTATGCACCCTATTTCGCATGGCAAAAACATCGTTCGTGAGGTAAAATTGGCACATCAAATGGGAACAATTCTTTCAATTGTAGACACCAGTTTGGGTTCTTTCGCATCTGAGTGTTTAGAGAGGTTTGTCGCTTTGGCCCTCAGTTGTTGCCATGACCATCCAGAAGAGCGGCCGTCGATGCTGGTTGTGGTGAGGGAGCTGGAGAACATACTAAACATGATGCCCGACGATAGCGGCACCTTGTATTCAGACTTGTCCACAAGATCAAGTGCTAGGCTTCCATCCTCACCGACATCAACGTCCTGCATCACCCGGGACCAGTTTGCATCAGGAAGCATTTCGGGGAGCGATCTCATCAGTGATGTCATGCCAACCATCAGACCTCGATGA 2742 42.41 MDQLISWTKGDPCTDNWIGVVCSYSDGAVRNLRVKELQLLYMDLSGKLAPEISQLSVLEKLNFMWNNLTGSIPKEIGSILSLKLLLLNGNKLSGSLPDELGNLTNLNRFQVDQNQISGPIPKSYANLIRVKHLHFNNNTLSGEIPSELSKLPKLIHLLLDNNNLSGSLPPEFSTLPMLHILQLDNNNFEGEIPASYENFPKLVKLSLRNCGLEGPIPNFSKIANLSYLDLSWNHFTGPMPPYNLSSRMTTIILSNNQLNGSIPRSFSNLPILQKLSLENNFLNGSVPSALWETMSFESSARLTLDLRNNSFFDISGSTNPPANVTLRLGGNPICQNLSGQNSDQFCTSKMVVDGLHTSSRNSSKTCPVSSCPTDSFFELVPDTPDPCFCASPLGIGYRLKSPSFSYFPPYMHLFEVYLTKELGLNKHQLLIDSYDWEGARLRMYLKLFPSFDSGTHKLDITEIFLITEQFMSWNFTPNDVFGPYELLNFTLPDRFQTVIFETEKMGISTGILAAIIVGSVFCVLLIVAVTVLLVTRHSRYHQVLSRKNLSSTIGLKIDGVKAFSFKEVQLATGNFNRSTQVGQGGYGKVYKGILSDNSVVAIKRAEEGSLQGQKEFLTEIKLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLRDWLSGFEFSDKSNTTVNLNFRMRLQIALGSAKGILYLHTEANPPIFHRDIKARNILLDAKFTAKVADFGLSRLAPDLDFEGDVPGHISTVVKGTPGYLDPEYFLTRKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVKLAHQMGTILSIVDTSLGSFASECLERFVALALSCCHDHPEERPSMLVVVRELENILNMMPDDSGTLYSDLSTRSSARLPSSPTSTSCITRDQFASGSISGSDLISDVMPTIRPR 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20231248 20241956 - CaPI482276_04g006240.1 Cam04g0624 124702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0624 913 Gene3D Ribonuclease Inhibitor 1 244 IPR032675 -
Cam04g0624 913 Pfam Protein kinase domain 576 847 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g0624 913 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 99 192 - -
Cam04g0624 913 Gene3D Ribonuclease Inhibitor 245 337 IPR032675 -
Cam04g0624 913 Gene3D Transferase(Phosphotransferase) domain 1 651 867 - -
Cam04g0624 913 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 651 866 - -
Cam04g0624 913 ProSitePatterns Serine/Threonine protein kinases active-site signature. 702 714 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g0624 913 ProSiteProfiles Protein kinase domain profile. 575 855 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g0624 913 Pfam Leucine Rich Repeat 81 103 IPR001611 GO:0005515(InterPro)
Cam04g0624 913 Pfam Leucine Rich Repeat 224 241 IPR001611 GO:0005515(InterPro)
Cam04g0624 913 Pfam Leucine Rich Repeat 153 175 IPR001611 GO:0005515(InterPro)
Cam04g0624 913 Pfam Leucine Rich Repeat 249 269 IPR001611 GO:0005515(InterPro)
Cam04g0624 913 Pfam Leucine Rich Repeat 130 151 IPR001611 GO:0005515(InterPro)
Cam04g0624 913 CDD STKc_IRAK 581 854 - -
Cam04g0624 913 ProSitePatterns Protein kinases ATP-binding region signature. 581 603 IPR017441 GO:0005524(InterPro)
Cam04g0624 913 FunFam Leucine-rich repeat protein kinase family protein 539 650 - -
Cam04g0624 913 SUPERFAMILY L domain-like 6 340 - -
Cam04g0624 913 Gene3D Phosphorylase Kinase; domain 1 546 650 - -
Cam04g0624 913 SUPERFAMILY Protein kinase-like (PK-like) 560 882 IPR011009 -
Cam04g0624 913 FunFam Leucine-rich repeat receptor-like kinase 2 98 - -
Cam04g0624 913 PANTHER RECEPTOR-LIKE PROTEIN 55 4 852 - -
Cam04g0624 913 SMART serkin_6 575 858 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0002 Cam-Chr3:1025178 Cam04g0624 Cam-Chr4:20231248 5.20E-180 dispersed
Cam04g0624 Cam-Chr4:20231248 Cam10g1357 Cam-Chr10:27096260 1.30E-100 dispersed
Cam04g0624 Cam-Chr4:20231248 Cam10g2256 Cam-Chr10:35750819 1.10E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85110 PF00069 Pkinase 1.50E-46 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0624 - - - 0.0