Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0641 ATGACATCTGGTCAGCCCTTGCTGGCTTCATCAGATTCTCCATCAGTTATTGAATACAGATCCCCATCTCGAAATCGTGGTTCCGTTGGTTGTCTATGTCGCAGTGCTTCCTTCACCTCTTCCAGTTACGACGATGCTCAGAGTGACATTGTGGATGTGAAGGAAAACTGCACCAGCCCTTTTGGAGATAACGGTTGGAGTAGTGAGAATTGCCTCAGACGGTCCACTTCGCTTTCTAGAAAGAGGCAGTTTTATACTGTTGGCTCTCTGTTTCCTCAGCAGTTTCCTTTTGGCTACCCCACCCAGGATAGAAGACGCCTGGTCTCGTGGGGTGCAATGGAGTTGCATAATGATGACCCTGCAAGCTTTGAACTTACTAGGGTCCAGGAGAAGTTGCATAAGGCGCAAAGAAGTCGTCATAAGAGCATACAGTTTGATGATAATTTACAACATGACGATAATCCAAGGTTGATATACATCAATGATCCAAGGAGAACTAATGACAAGTATGAGTTCACAGGAAATGAGATAACCACCAGCAAGTACACATTGATTACCTTCTTGCCAAAGAACCTCTTTATTCAGTTCCACCGTGTAGCATATCTTTATTTTCTTGCCATTGCAGCTCTTAACCAGCTTCCACCTTTGGCAGTCTTTGGGAGAACAGTATCTCTTTTTCCCCTTCTGTTTGTGCTCTGTGTTACAGCTATTAAAGATGGCTACGAAGATTGGCGTAGACACAGATCTGATCGCAATGAGAACAATAGACAGGCTCTGGTGTTTCAATCTGATGATTTCCGATTGAAAGTATGGAAAAAAATACGAGCAGGTGAAGTTGTAAAGATTTGTGCTGATGAGGTCATTCCCTGTGACATGGTTTTATTGGGGACAAGTGATCCCAGTGGCCTTGCTTACATCCAAACGATGAATTTGGATGGTGAGTCAAACTTGAAGACAAGGTATGCTAGGCAGGAAACAGCATCTGCAGTAGCCGAGGGATGTTCATATTCTGGTCTTATTCGATGTGAACAACCTAATAGGAACATTTATGAGTTCACTGCCAATATGGAGTTCAACGGTCATAAATTTCCCCTCAGCCAGTCAAACATAGTCTTGCGTGGTTGTCAGCTAAAGAACACTGAATGGATTATTGGGGTGGTTGTCTATGCTGGACAAGAGACAAAAGCCATGCTAAACAGTGCAATGTCTCCTGCCAAGCGAAGTAAACTGGAGGGTTACATGAACAGGGAAACATTGTGGTTGTCAATTTTCCTCTTTATCATGTGTTTAGTTGTGGCCCTTGGAATGGGCTCATGGCTCGTTCGGCACAAGGAACGGCTTGATACCTTGCCATATTATAGGAAAAGGTATTTCACTAATGGGGCAGATGATGGTAAGAGGTACAGGTTTTATGGAATTCCTATGGAGACATTTTTCTCCTTTCTGAGTTCTATTATAGTGTTTCAGATCATGATACCGATATCCCTTTATATTACGATGGAGATGGTGAGACTAGGCCAGTCATATTTCATGATTGAAGATAAGCACATGTACTGCAGAATCTCTTCCTCAAGGTTCCAGTGCAGATCGTTGAATATCAATGAGGATCTTGGTCAAGTTCGCTATGTATTTTCTGATAAAACAGGAACACTTACTGAAAATAAAATGGAATTTAAAAGAGCAAGCGTGCACGGGAAGAATTACGGGAACAACTTGTCTGAGGAATATTCATCGATGTTGTATTCCATTCCAGCAACTTTAGGGAGGAGGAGGTGGAAACTTAAATCTGAAGTTGCTGTTGATACCGAACTTGTCAAATTATTGCACAAGGGCCTAAACGGAGATGAAAAGATTGCTGCACATGAATTTTTTCTTACATTGGCTGCATGCAATACTGTAATTCCTATTCACATGGATGACAAATCTAATTATGCAAATGGCGAATTGCACGAGGATTTTGAAACTATTGATTATCAGGGGGAATCCCCTGACGAGCAAGCACTAGTTGCTGCAGCCTCCGCTTATGGATATACCCTTTTTGAGCGCACGTCGGGGCATATCGTTATTGATGTCAATGGTGAGAACTTAAGGTTAGACGTTTTGGGTTTACATGAGTTCGATAGTGTTCGCAAAAGAATGTCTGTCGTCATCAGATTCCCCGACAACACTATAAAGGTTCTGGTAAAAGGTGCCGATACTTCAATGTTGAGTATTTTAGGCATTGACTATGATAGGGAAGAATTTATCAAGCATACTACTCAGAGCCATTTGGGTGAATATTCAATGGAAGGCTTGCGAACACTTGTAGTTGCTGCCAGAGATCTGAAAGATTCTGAATTTGAGTTGTGGCAGACCAGATATGAGGATGCTAGTACTTCACTGACTGAAAGAGCAGTAAAACTACGTCAGACAGCAGCTCTTATAGAATGCGATCTAAAGCTTTTGGGTGCAACCGCGATTGAGGACAAACTTCAAGATGGTGTACCTGAAGCCATTGAATCTCTTCGGCAGGCAGGAATAAAGGTTTGGATTCTGACTGGAGATAAGCAGGAGACAGCCATATCAATCGGTCTCTCCTGCAAACTGCTGACTTCTGATATGCAGTCAATAATTATCAATGGAAATTCCGAGAATGATTGCAGGCAACTTTTAGCTGATGCTATGGAAAAATATAGTATTAAATCAACACAGTGCGGAAGTCAAAGACCGAATCATAAGAACTGTGAGAATGAATGTCATGATTTACCAAAGACATCTAGTATGTCAGATTTTAACGAAGGGAAAGAAGACCTGACTGATAAACCACTAGCTCTAATAATTGACGGAAACAGTTTGGTGTATATTTTGGAGAAGGAATTGGAGTCTGAGCTTTTTGACCTTGCAACTTCATGCGATGTTGTGCTATGTTGTCGTGTTGCTCCTCTGCAGAAAGCTGGAATTGTTGATTTGATCAAGAGTAGAACTGATGATATGACATTGGCAATTGGTGATGGGGCCAATGATGTCTCAATGATTCAGATGGCCGATGTAGGTGTTGGTATATGTGGACAGGAGGGGCGTCAAGCAGTAATGGCATCTGATTTTGCCATGGGACAATTTCGCTTTCTAAAGAGATTGCTACTAGTGCATGGACATTGGAACTATCAACGTGTAGGCTACATGGTTCTTTACAACTTCTACCGCAATGCTGTTTTCGTCTTGATGCTCTTCTGGTACATTCTATGCACGGCATTCTCAACAACTTCAGCTTTGACCGATTGGAGTAGTGTGTTTTACTCTGTTATTTATACTTCTATCCCTACTATTTTTGTTGGTATTCTGGACAAAGACTTGAGTGACAAAACTCTACTCCAATATCCTAAGCTGTATGGTGCTGGCCATAGACAGGAGGCATACAATTTGCGTCTCTTTTGGTTCACAATGATTGATACCCTGTGGCAGAGTCTTGTTCTCTTCTATGTCCCATTATACATTTACAAGGAGAGTACCATTGATATATGGAGCTTGGGAAGTTTGTGGACGATAGCGGTTGTTATCCTTGTGAACGTACACTTGGCGATGGATGTTCAACGTTGGGTATATATTACACATGCTGCCGTCTGGGGATCCATAGTCATAACATATGCCTGCATGGTGGTGTTGGATTCGATACCGGTTTTTCCTAACTACTGGACGATCTTTCATCTTGCCAAGTCCCCAACTTACTGGCTAACTATATTGCTCATAATAGTTGTAGCATTGCTTCCACGTTATCTTTTTAAAGTTGTGAATCAAAGATTTTGGCCCTCGGATATTCAGATAGCCAGAGAAGCTGAGGTGCTGAGAAAACGAAAAGATGGCTTCCCTGTGGTACACATGCGTGATTGTAACTTTGAAGGATGCGAAATTCGTGTCCGAACTGGAGGAGGGATCTCGAGTCATAGGGTTTATGTTTTGTTGTTTTCGGTTGGAATGGAAGAGGAGGATGAAACTAATGCAGAATTCTCTGATACTGTATCATATGATATTAGGGTGATGAGGTAA 4023 41.98 MTSGQPLLASSDSPSVIEYRSPSRNRGSVGCLCRSASFTSSSYDDAQSDIVDVKENCTSPFGDNGWSSENCLRRSTSLSRKRQFYTVGSLFPQQFPFGYPTQDRRRLVSWGAMELHNDDPASFELTRVQEKLHKAQRSRHKSIQFDDNLQHDDNPRLIYINDPRRTNDKYEFTGNEITTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRQALVFQSDDFRLKVWKKIRAGEVVKICADEVIPCDMVLLGTSDPSGLAYIQTMNLDGESNLKTRYARQETASAVAEGCSYSGLIRCEQPNRNIYEFTANMEFNGHKFPLSQSNIVLRGCQLKNTEWIIGVVVYAGQETKAMLNSAMSPAKRSKLEGYMNRETLWLSIFLFIMCLVVALGMGSWLVRHKERLDTLPYYRKRYFTNGADDGKRYRFYGIPMETFFSFLSSIIVFQIMIPISLYITMEMVRLGQSYFMIEDKHMYCRISSSRFQCRSLNINEDLGQVRYVFSDKTGTLTENKMEFKRASVHGKNYGNNLSEEYSSMLYSIPATLGRRRWKLKSEVAVDTELVKLLHKGLNGDEKIAAHEFFLTLAACNTVIPIHMDDKSNYANGELHEDFETIDYQGESPDEQALVAAASAYGYTLFERTSGHIVIDVNGENLRLDVLGLHEFDSVRKRMSVVIRFPDNTIKVLVKGADTSMLSILGIDYDREEFIKHTTQSHLGEYSMEGLRTLVVAARDLKDSEFELWQTRYEDASTSLTERAVKLRQTAALIECDLKLLGATAIEDKLQDGVPEAIESLRQAGIKVWILTGDKQETAISIGLSCKLLTSDMQSIIINGNSENDCRQLLADAMEKYSIKSTQCGSQRPNHKNCENECHDLPKTSSMSDFNEGKEDLTDKPLALIIDGNSLVYILEKELESELFDLATSCDVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWNYQRVGYMVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTIFVGILDKDLSDKTLLQYPKLYGAGHRQEAYNLRLFWFTMIDTLWQSLVLFYVPLYIYKESTIDIWSLGSLWTIAVVILVNVHLAMDVQRWVYITHAAVWGSIVITYACMVVLDSIPVFPNYWTIFHLAKSPTYWLTILLIIVVALLPRYLFKVVNQRFWPSDIQIAREAEVLRKRKDGFPVVHMRDCNFEGCEIRVRTGGGISSHRVYVLLFSVGMEEEDETNAEFSDTVSYDIRVMR 1340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20412835 20418916 + CaPI482276_04g006410.1 Cam04g0641 124719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0641 1340 ProSitePatterns E1-E2 ATPases phosphorylation site. 546 552 IPR018303 -
Cam04g0641 1340 Gene3D - 234 401 - -
Cam04g0641 1340 NCBIfam phospholipid-translocating P-type ATPase 172 1270 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Cam04g0641 1340 Gene3D - 520 540 - -
Cam04g0641 1340 SUPERFAMILY Calcium ATPase, transmembrane domain M 172 1262 IPR023298 -
Cam04g0641 1340 Gene3D - 658 795 IPR023299 GO:0000166(InterPro)
Cam04g0641 1340 Gene3D - 541 553 IPR023214 -
Cam04g0641 1340 SUPERFAMILY HAD-like 539 1041 IPR036412 -
Cam04g0641 1340 CDD P-type_ATPase_APLT_Dnf-like 174 1155 - -
Cam04g0641 1340 Gene3D - 812 1035 IPR023214 -
Cam04g0641 1340 Pfam Phospholipid-translocating P-type ATPase C-terminal 1023 1263 IPR032630 -
Cam04g0641 1340 Pfam Cation transport ATPase (P-type) 661 737 - -
Cam04g0641 1340 NCBIfam HAD-IC family P-type ATPase 477 568 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cam04g0641 1340 NCBIfam HAD-IC family P-type ATPase 966 1081 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cam04g0641 1340 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 550 828 IPR023299 GO:0000166(InterPro)
Cam04g0641 1340 Gene3D - 554 576 IPR023299 GO:0000166(InterPro)
Cam04g0641 1340 SFLD C1.7: P-type atpase like 528 1046 - -
Cam04g0641 1340 SFLD p-type atpase 528 1046 IPR044492 -
Cam04g0641 1340 MobiDBLite consensus disorder prediction 1 28 - -
Cam04g0641 1340 FunFam Phospholipid-transporting ATPase 811 1035 - -
Cam04g0641 1340 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 148 1271 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Cam04g0641 1340 Pfam E1-E2 ATPase 256 501 - -
Cam04g0641 1340 SUPERFAMILY Calcium ATPase, transduction domain A 255 397 IPR008250 -
Cam04g0641 1340 Pfam Phospholipid-translocating ATPase N-terminal 158 223 IPR032631 -
Cam04g0641 1340 Pfam haloacid dehalogenase-like hydrolase 783 859 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0641 Cam-Chr4:20412835 Cam04g1173 Cam-Chr4:25789838 3.20E-191 dispersed
Cam07g0250 Cam-Chr7:3620482 Cam04g0641 Cam-Chr4:20412835 2.00E-159 transposed
Cam08g1296 Cam-Chr8:19252900 Cam04g0641 Cam-Chr4:20412835 0.00E+00 transposed
Cam10g1546 Cam-Chr10:29127082 Cam04g0641 Cam-Chr4:20412835 7.70E-15 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0641 K14802 - csv:101206692 2434.45