Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0648 ATGGCACAATCAATTGGATATGCTGAAACAGATCCATCTGGTCGCTATGGACGGTTTAGAGAAATTCTAGGCAAAGGAGCCATGAAAACAGTATATAAAGGGTTTGATGAGATGCTTGGAATTGAAGTAGCTTGGAATCAAATCCACCTCAAAGATGTCTTCCATTCCCCTCAAGAACTACAACGTCTATACTCAGAAATTCATCTCCTCAAGAACCTCGACCACGACTCGATCATCCGGTTCTACACTTCTTGGATCGATACTCATTGCCGAACGTTCAATTTCATCACCGAAATGTTCACCTCCGGCACCCTTAGAGAGTACCGACAAAAGTATCGAAACGTCAATATCGAAGCAATCAAGAATTGGGCTCGTCAAATCCTACAAGGTCTGGCTTATCTTCATGGTCATGATCCACCCGTAATCCATAGAGACCTCAAGTGTGATAACGTATTTATCAACGGCCATCTCGGACTAGTTAAAATCGGTGACCTAGGACTTGCGACAATCCTTCATGATTCTAAATATGCCTATAGCATCATAGGTACACCAGAATTCATGGCACCAGAGCTTTATGATGAGGAATATAATGAACTTGTGGATGTTTATTCTTTTGGGATGTGTATGATTGAGATGCTTACTTTGGAGTATCCTTATAGCGAGTGCTCTAACCCTGCTCAGATATATAAGAAAGTCACTTCAGGAAAATTGCCTAATGCATTCTATGAGATCAAAGATTTGGAGGCCCAAAGATTTGTAAGAAAATGTTTGGAGAATGTTTCAAAGAGGCTGCCTGCTAGAGAGCTCTTGCTTGATCCATTTCTAGCACCTAATTCCAACAATAACAATGCCTCTTATAATGAAGACTTACTGTCTTCATCTCTATCTCCAAAGAAATCAATGGCAAGAAGAACGCACATGGTTATTTCTGGATCAATGAATCCCAAGGACGATTCGGTTTTTCTAAAAGTGCATATCAAAGTGAATAACGGTAAATCTAAGAATGTATATTTTGCATTCGACACCAAAAACGACACCGCAATCGACGTTGCAACTGAGATGGTTAAAGAGGTGGAAATTATTAGTGATTGGGATCCATTGGAGATAGCTTTGATGATAAAGAAGGAGATATCCACATTGATTCCAGATTGGGAGGAATGGAAGTTACCCAAAAACCACCATCAAGATAGCTTCACCTATGCACAAGACCACAAGGACGACGACGACAATGATGATGATGACGAAAACCATGAAATACCACATCCTTTCTATTATTGTTGCTCCTCTCCTGCCTCCTCCTCAAATTCTCTTCAGGGTTTCTACTCTTTAAAAGAGAGCCTCAATCATCATTTTGGAGGAATGAAGGAAACTTCTACTACCACTGAATGGTTTCAAGAGGATGTTCTCAATAATATTGATGATGATACAAGTTCTAGTTGCTCTCTCAATTCCTTCAATTACTCTGATATAAGCTTTTACTCAAACAATGAAGATGAGTATGAATATGAATCAAATGTCAAAGGAAGTGAGCCTCAGTACATCTCAACAGCCAAGCAACCTACAAGATTTTGCCCAACCATGAAGATAGACACACACCCTTTGAGGCAAAAGGACACCAAAAAAATGATCGATCGAGAAATATTTGAGAGTCGATCTCGATCAAATAACTCGCATAAGCTCATGAGAGTGAAATCAATGGTGAACCTCCGTAGCGAGACGTTGCATCGGTCTTTAGTAGAGATGTTGTTGAAGAAGCGCTTGTTCAATACGGTGGGTGCAATGGAGAACATTGGATACCAAAAACCATAG 1809 40.13 MAQSIGYAETDPSGRYGRFREILGKGAMKTVYKGFDEMLGIEVAWNQIHLKDVFHSPQELQRLYSEIHLLKNLDHDSIIRFYTSWIDTHCRTFNFITEMFTSGTLREYRQKYRNVNIEAIKNWARQILQGLAYLHGHDPPVIHRDLKCDNVFINGHLGLVKIGDLGLATILHDSKYAYSIIGTPEFMAPELYDEEYNELVDVYSFGMCMIEMLTLEYPYSECSNPAQIYKKVTSGKLPNAFYEIKDLEAQRFVRKCLENVSKRLPARELLLDPFLAPNSNNNNASYNEDLLSSSLSPKKSMARRTHMVISGSMNPKDDSVFLKVHIKVNNGKSKNVYFAFDTKNDTAIDVATEMVKEVEIISDWDPLEIALMIKKEISTLIPDWEEWKLPKNHHQDSFTYAQDHKDDDDNDDDDENHEIPHPFYYCCSSPASSSNSLQGFYSLKESLNHHFGGMKETSTTTEWFQEDVLNNIDDDTSSSCSLNSFNYSDISFYSNNEDEYEYESNVKGSEPQYISTAKQPTRFCPTMKIDTHPLRQKDTKKMIDREIFESRSRSNNSHKLMRVKSMVNLRSETLHRSLVEMLLKKRLFNTVGAMENIGYQKP 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20508927 20515302 + CaPI482276_04g006480.1 Cam04g0648 124726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0648 602 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g0648 602 Gene3D Phosphorylase Kinase; domain 1 3 98 - -
Cam04g0648 602 Gene3D - 315 387 - -
Cam04g0648 602 Gene3D Transferase(Phosphotransferase) domain 1 100 282 - -
Cam04g0648 602 SUPERFAMILY Protein kinase-like (PK-like) 19 447 IPR011009 -
Cam04g0648 602 SMART serkin_6 17 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g0648 602 CDD STKc_WNK 15 275 - -
Cam04g0648 602 FunFam Probable serine/threonine-protein kinase WNK1 2 98 - -
Cam04g0648 602 FunFam probable serine/threonine-protein kinase WNK9 100 281 - -
Cam04g0648 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g0648 602 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 597 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cam04g0648 602 ProSiteProfiles Protein kinase domain profile. 17 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1972 Cam-Chr2:32861874 Cam04g0648 Cam-Chr4:20508927 5.80E-159 dispersed
Cam04g0648 Cam-Chr4:20508927 Cam06g0998 Cam-Chr6:15480120 1.70E-115 dispersed
Cam04g0648 Cam-Chr4:20508927 Cam06g0620 Cam-Chr6:8446147 2.50E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85115 PF00069 Pkinase 1.70E-46 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0648 K08867 - csv:101207665 985.326