Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam04g0648 | ATGGCACAATCAATTGGATATGCTGAAACAGATCCATCTGGTCGCTATGGACGGTTTAGAGAAATTCTAGGCAAAGGAGCCATGAAAACAGTATATAAAGGGTTTGATGAGATGCTTGGAATTGAAGTAGCTTGGAATCAAATCCACCTCAAAGATGTCTTCCATTCCCCTCAAGAACTACAACGTCTATACTCAGAAATTCATCTCCTCAAGAACCTCGACCACGACTCGATCATCCGGTTCTACACTTCTTGGATCGATACTCATTGCCGAACGTTCAATTTCATCACCGAAATGTTCACCTCCGGCACCCTTAGAGAGTACCGACAAAAGTATCGAAACGTCAATATCGAAGCAATCAAGAATTGGGCTCGTCAAATCCTACAAGGTCTGGCTTATCTTCATGGTCATGATCCACCCGTAATCCATAGAGACCTCAAGTGTGATAACGTATTTATCAACGGCCATCTCGGACTAGTTAAAATCGGTGACCTAGGACTTGCGACAATCCTTCATGATTCTAAATATGCCTATAGCATCATAGGTACACCAGAATTCATGGCACCAGAGCTTTATGATGAGGAATATAATGAACTTGTGGATGTTTATTCTTTTGGGATGTGTATGATTGAGATGCTTACTTTGGAGTATCCTTATAGCGAGTGCTCTAACCCTGCTCAGATATATAAGAAAGTCACTTCAGGAAAATTGCCTAATGCATTCTATGAGATCAAAGATTTGGAGGCCCAAAGATTTGTAAGAAAATGTTTGGAGAATGTTTCAAAGAGGCTGCCTGCTAGAGAGCTCTTGCTTGATCCATTTCTAGCACCTAATTCCAACAATAACAATGCCTCTTATAATGAAGACTTACTGTCTTCATCTCTATCTCCAAAGAAATCAATGGCAAGAAGAACGCACATGGTTATTTCTGGATCAATGAATCCCAAGGACGATTCGGTTTTTCTAAAAGTGCATATCAAAGTGAATAACGGTAAATCTAAGAATGTATATTTTGCATTCGACACCAAAAACGACACCGCAATCGACGTTGCAACTGAGATGGTTAAAGAGGTGGAAATTATTAGTGATTGGGATCCATTGGAGATAGCTTTGATGATAAAGAAGGAGATATCCACATTGATTCCAGATTGGGAGGAATGGAAGTTACCCAAAAACCACCATCAAGATAGCTTCACCTATGCACAAGACCACAAGGACGACGACGACAATGATGATGATGACGAAAACCATGAAATACCACATCCTTTCTATTATTGTTGCTCCTCTCCTGCCTCCTCCTCAAATTCTCTTCAGGGTTTCTACTCTTTAAAAGAGAGCCTCAATCATCATTTTGGAGGAATGAAGGAAACTTCTACTACCACTGAATGGTTTCAAGAGGATGTTCTCAATAATATTGATGATGATACAAGTTCTAGTTGCTCTCTCAATTCCTTCAATTACTCTGATATAAGCTTTTACTCAAACAATGAAGATGAGTATGAATATGAATCAAATGTCAAAGGAAGTGAGCCTCAGTACATCTCAACAGCCAAGCAACCTACAAGATTTTGCCCAACCATGAAGATAGACACACACCCTTTGAGGCAAAAGGACACCAAAAAAATGATCGATCGAGAAATATTTGAGAGTCGATCTCGATCAAATAACTCGCATAAGCTCATGAGAGTGAAATCAATGGTGAACCTCCGTAGCGAGACGTTGCATCGGTCTTTAGTAGAGATGTTGTTGAAGAAGCGCTTGTTCAATACGGTGGGTGCAATGGAGAACATTGGATACCAAAAACCATAG | 1809 | 40.13 | MAQSIGYAETDPSGRYGRFREILGKGAMKTVYKGFDEMLGIEVAWNQIHLKDVFHSPQELQRLYSEIHLLKNLDHDSIIRFYTSWIDTHCRTFNFITEMFTSGTLREYRQKYRNVNIEAIKNWARQILQGLAYLHGHDPPVIHRDLKCDNVFINGHLGLVKIGDLGLATILHDSKYAYSIIGTPEFMAPELYDEEYNELVDVYSFGMCMIEMLTLEYPYSECSNPAQIYKKVTSGKLPNAFYEIKDLEAQRFVRKCLENVSKRLPARELLLDPFLAPNSNNNNASYNEDLLSSSLSPKKSMARRTHMVISGSMNPKDDSVFLKVHIKVNNGKSKNVYFAFDTKNDTAIDVATEMVKEVEIISDWDPLEIALMIKKEISTLIPDWEEWKLPKNHHQDSFTYAQDHKDDDDNDDDDENHEIPHPFYYCCSSPASSSNSLQGFYSLKESLNHHFGGMKETSTTTEWFQEDVLNNIDDDTSSSCSLNSFNYSDISFYSNNEDEYEYESNVKGSEPQYISTAKQPTRFCPTMKIDTHPLRQKDTKKMIDREIFESRSRSNNSHKLMRVKSMVNLRSETLHRSLVEMLLKKRLFNTVGAMENIGYQKP | 602 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 20508927 | 20515302 | + | CaPI482276_04g006480.1 | Cam04g0648 | 124726 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam04g0648 | 602 | Pfam | Protein kinase domain | 21 | 275 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam04g0648 | 602 | Gene3D | Phosphorylase Kinase; domain 1 | 3 | 98 | - | - | |
Cam04g0648 | 602 | Gene3D | - | 315 | 387 | - | - | |
Cam04g0648 | 602 | Gene3D | Transferase(Phosphotransferase) domain 1 | 100 | 282 | - | - | |
Cam04g0648 | 602 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 447 | IPR011009 | - | |
Cam04g0648 | 602 | SMART | serkin_6 | 17 | 275 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam04g0648 | 602 | CDD | STKc_WNK | 15 | 275 | - | - | |
Cam04g0648 | 602 | FunFam | Probable serine/threonine-protein kinase WNK1 | 2 | 98 | - | - | |
Cam04g0648 | 602 | FunFam | probable serine/threonine-protein kinase WNK9 | 100 | 281 | - | - | |
Cam04g0648 | 602 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 141 | 153 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam04g0648 | 602 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 5 | 597 | IPR050588 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER) | |
Cam04g0648 | 602 | ProSiteProfiles | Protein kinase domain profile. | 17 | 275 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g1972 | Cam-Chr2:32861874 | Cam04g0648 | Cam-Chr4:20508927 | 5.80E-159 | dispersed | |
Cam04g0648 | Cam-Chr4:20508927 | Cam06g0998 | Cam-Chr6:15480120 | 1.70E-115 | dispersed | |
Cam04g0648 | Cam-Chr4:20508927 | Cam06g0620 | Cam-Chr6:8446147 | 2.50E-119 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85115 | PF00069 | Pkinase | 1.70E-46 | CL0016 | Cam | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam04g0648 | K08867 | - | csv:101207665 | 985.326 |