Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0651 ATGGCGGTTTCTCCCCACTCTTTTCCGCCGAGGAAACGGCGGCCGTCCGCCGCCGCTTTCGTCTCTCCCAAACTCTCCGTCCCAATCCTCCTCGAATCCCTTCTCTCTCTCTCTCAAGAAATCTCCGGGATGAAACCACTCCAATTCCTCCTCAACCGTTACTCCAATTCCATGATTCGCAAATCAAGATTGCTCGAGATTTTCCTCGACGACCTCCGCCGCAACCGGATCGTTTCGCTCTCCGCCTCCGCCTCCCTCTGTCTCGAAGAAATGTACATCGTTTTACAGAGAATCAAGACGTTGATTGAAGATTGTTCTAACGGAAGTAAGATGTGGTTACTCACACAGAATGAATCCATCGCCAATAATTTCCACGAACTCACTTTGGATTTATCGACTCTGCTCGATATCTTCCCTGTCAAAGACGCTGAATTAACCGAAGACGTTGAAGAATTGTTTTACCTCTTGAGAAATCAGTGCTCTGAATCCGCCGCTTTCCTCGATCCAAGAGATGAAACTCTCCGATTCAGATTATTGAAGATGATCGATCGAATCAAAGACGAAATCGTTCCGGATTATTCCGAATTGTCAGAGATTTTCTCCAGGATTGATATTCGCGATTCGTCGAGTTGTAGAGAGGAAATCGAGAATCTGGAAGATGAAATTCAGAATCAAACGGATGAGAAATCGAGATCGGACGTGATTGCGTTGATCGGATTAGTTCGTTACGCGAAATGCGTTTTATATGGAGCATCGACGGCGGAATATGGTTTCCGGCGGAAAGATTCGATTTCCGATTTGCCTGTACCGGCGGATTTCAGATGTCCGATTAGTTTGGATTTAATGCAAGACCCTGTTGTCGTGGCAACAGGACATACGTACGATCGTGCGGCGATAACTCTGTGGATTGAATCTGGGCATAACACGTGTCCGAAGACAGGTCAGACTCTGGCCCACACGAACCTAATTCCGAACCGAGCATTGAAAAATTTGATTGCGATGTGGTGCCGTCAAGAGAGAATTCCGTTTGATGTAACGGAAAGTAATAAAGAGAGAGTCAACGACGTCACGTTAAATAAAGCGGCGTTAGAAGCAATGAGAATGACGGCAACGTTTCTCGTTAACAAACTCGCCACGTCAGCTAATTCTTCCGTGAACGACGTCGTTTACGAGCTTCGTGTTTTGGCTAAAACAGATTCCGGCAGCCGTGGATATATCGCTCAAGCCGGAGCTCTGCCGTTACTCGTCCGATATCTCAACTCCGACAACCCGATTCTCCAAGTGAACGCCGTCACCACGGTGCTCAACCTCTCGATTTTCGAAGCCAACAAATCGCTGATAATGGAAACCGACGGCGCGCTGATCGGAGTGATCGAGGTACTCCGGTCCGGCGCTACCTGGGAAGCGAAAGGTAACGCCGCTGCCACCATATTCAGCCTCTCCAGTATCCATTCTTACCGGCGGAGATTGGGAAGGAAGACACGTGTCATAAAGGGATTGCTTGATTTGGCTAAAGACGGGCCGATTAATTCGAAGAGGGATGCTCTGGTTACCATTTTGACATTAGCCGGCGATAGGGAGACCGTCGGGAGATTAATCGAAGGTGGGATTATGGAGACGGTAAGTCATCTGATGAACAGCCTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTGAGAAAAGGGGGATTTGTGGCGATTGCTTCGGGATTTTATCTGATTAAGAAATTGGGGGCGGTGTTGAGAGAAGGCTCCGATAGGGCCAGAGAAAGCGCCGCCGCGGCGCTGGTGACAATGTGCCGGCAAGGTGGGTCGGAGATGGTGACGGAGTTGGCGTCGATGGCCGGGATTGAGAGAGTCATTTGGGAACAGATGGGGAGTGGGACAATTAGAGGGCGGCGGAAGGCAGCGTCGCTGTTGAGAATACTCCGGCGATGGGCGGCGGGTTTGGATGTAATAGGTGGTGCCGGAGGAGATTCCTTAACGGTTACTTCGTCGAGAATCGGCGGCGACTCAACCACCATTGTTAGTTCGTCAAGAGGAGCAACTGTGCATAGCTAG 2064 50.0 MAVSPHSFPPRKRRPSAAAFVSPKLSVPILLESLLSLSQEISGMKPLQFLLNRYSNSMIRKSRLLEIFLDDLRRNRIVSLSASASLCLEEMYIVLQRIKTLIEDCSNGSKMWLLTQNESIANNFHELTLDLSTLLDIFPVKDAELTEDVEELFYLLRNQCSESAAFLDPRDETLRFRLLKMIDRIKDEIVPDYSELSEIFSRIDIRDSSSCREEIENLEDEIQNQTDEKSRSDVIALIGLVRYAKCVLYGASTAEYGFRRKDSISDLPVPADFRCPISLDLMQDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTNLIPNRALKNLIAMWCRQERIPFDVTESNKERVNDVTLNKAALEAMRMTATFLVNKLATSANSSVNDVVYELRVLAKTDSGSRGYIAQAGALPLLVRYLNSDNPILQVNAVTTVLNLSIFEANKSLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLSSIHSYRRRLGRKTRVIKGLLDLAKDGPINSKRDALVTILTLAGDRETVGRLIEGGIMETVSHLMNSLPEEAVTILEVVVRKGGFVAIASGFYLIKKLGAVLREGSDRARESAAAALVTMCRQGGSEMVTELASMAGIERVIWEQMGSGTIRGRRKAASLLRILRRWAAGLDVIGGAGGDSLTVTSSRIGGDSTTIVSSSRGATVHS 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20588538 20590601 - CaPI482276_04g006510.1 Cam04g0651 124729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0651 687 CDD RING-Ubox_PUB 270 322 IPR045210 -
Cam04g0651 687 Gene3D - 370 647 IPR011989 -
Cam04g0651 687 FunFam RING-type E3 ubiquitin transferase 268 342 - -
Cam04g0651 687 SMART Ubox_2 272 335 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam04g0651 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 410 452 IPR000225 GO:0005515(InterPro)
Cam04g0651 687 SUPERFAMILY RING/U-box 260 341 - -
Cam04g0651 687 PANTHER U BOX DOMAIN-CONTAINING 52 648 - -
Cam04g0651 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 350 IPR013083 -
Cam04g0651 687 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam04g0651 687 Coils Coil 208 235 - -
Cam04g0651 687 SUPERFAMILY ARM repeat 372 644 IPR016024 -
Cam04g0651 687 Gene3D - 54 141 IPR036537 GO:0007166(InterPro)
Cam04g0651 687 Pfam Armadillo/beta-catenin-like repeat 403 438 IPR000225 GO:0005515(InterPro)
Cam04g0651 687 Pfam U-box domain 269 340 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0651 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1298 Cam-Chr2:25368043 Cam04g0651 Cam-Chr4:20588538 2.50E-24 dispersed
Cam04g0651 Cam-Chr4:20588538 Cam11g0631 Cam-Chr11:7846123 1.80E-97 dispersed
Cam04g0651 Cam-Chr4:20588538 Cam03g0697 Cam-Chr3:7873622 2.10E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g376 Blo01g01030 . Bda01g00060 . . . . . . . Cma03g00299 Cma07g01227 Car03g00261 Car07g01182 Sed14g0585 Cpe10g00996 . Bhi03g02213 Tan03g0722 Cmetu08g1604 . Hepe04g0691 . . Cla04g00653 Cam04g0651 Cec04g0772 Cco04g0823 Clacu04g0698 Cmu04g0693 Cre04g0745 . Cone10ag0439 . . Lsi01g01607 Csa04g01681 Chy08g00584 . . . . . . . Bma01g01714 . . Cmo03g00311 Cmo07g01269 . . . . . Cpe19g00149 . . . . . . . . . . . . . . . . . Cme08g02117
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g1516 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.3
Cam02g1298 . 213 857 U-box Gene Family AT2G23140 66.6 8.5e-126 448.0
Cam08g2190 . 1 778 U-box Gene Family AT1G24330 59.7 5.4e-244 840.9
Cam11g1412 . 1 755 U-box Gene Family AT1G24330 58.2 2.6e-230 795.4
Cam08g2190 . 1 777 U-box Gene Family AT1G67530 59.4 1.5e-241 832.8
Cam11g1412 . 1 756 U-box Gene Family AT1G67530 57.4 1.4e-226 783.1
Cam01g2299 . 1 362 U-box Gene Family AT4G21350 62.6 4.8e-121 431.4
Cam07g0206 . 135 455 U-box Gene Family AT3G07360 54.6 1.2e-78 290.4
Cam07g0630 . 265 452 U-box Gene Family AT1G71020 70.9 8.2e-73 271.6
Cam01g0623 . 635 834 U-box Gene Family AT1G71020 55.9 5.0e-54 209.1
Cam03g0158 . 281 450 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Cam05g2319 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Cam02g2095 . 255 425 U-box Gene Family AT1G71020 57.6 7.7e-47 185.3
Cam07g0630 . 16 656 U-box Gene Family AT1G23030 56.6 6.3e-110 395.2
Cam01g0623 . 421 1024 U-box Gene Family AT1G23030 52.0 2.2e-83 307.0
Cam03g0158 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Cam02g2095 . 93 635 U-box Gene Family AT2G28830 50.6 2.8e-99 359.8
Cam03g0158 . 24 689 U-box Gene Family AT3G46510 68.0 1.3e-169 593.6
Cam02g2095 . 3 638 U-box Gene Family AT3G46510 66.4 8.7e-158 554.3
Cam05g2319 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Cam02g1021 . 36 640 U-box Gene Family AT3G46510 50.2 6.1e-87 318.9
Cam05g2319 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Cam02g2095 . 13 628 U-box Gene Family AT3G54850 57.1 3.9e-115 412.5
Cam03g0158 . 31 650 U-box Gene Family AT3G54850 55.6 2.0e-103 373.6
Cam02g1021 . 92 644 U-box Gene Family AT5G42340 64.2 7.2e-128 454.9
Cam04g0651 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cam03g0697 . 1 714 U-box Gene Family AT1G29340 68.0 1.1e-246 849.7
Cam05g1291 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Cam04g0511 . 4 422 U-box Gene Family AT3G52450 52.4 6.8e-119 424.5
Cam10g1792 . 1 403 U-box Gene Family AT3G52450 50.9 7.8e-115 411.0
Cam10g1792 . 1 403 U-box Gene Family AT2G35930 55.8 1.5e-120 429.9
Cam04g0511 . 7 422 U-box Gene Family AT2G35930 51.4 7.9e-117 417.5
Cam05g1176 . 9 424 U-box Gene Family AT3G19380 64.4 2.0e-147 519.2
Cam05g1176 . 1 424 U-box Gene Family AT1G49780 64.6 5.9e-152 534.3
Cam01g1597 . 1 407 U-box Gene Family AT5G64660 53.9 7.1e-121 431.0
Cam01g1597 . 1 407 U-box Gene Family AT5G09800 50.8 1.8e-105 379.8
Cam05g2861 . 1 454 U-box Gene Family AT3G49810 63.2 6.1e-155 544.3
Cam08g2137 . 1 454 U-box Gene Family AT3G49810 63.0 3.0e-154 542.0
Cam08g2137 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Cam05g2861 . 1 454 U-box Gene Family AT5G65920 61.5 5.5e-148 521.2
Cam05g0179 . 82 953 U-box Gene Family AT2G45910 53.0 2.5e-234 808.9
Cam11g0174 . 4 726 U-box Gene Family AT2G19410 50.2 8.1e-211 730.7
Cam01g0472 . 65 841 U-box Gene Family AT4G25160 51.8 1.2e-217 753.4
Cam09g1920 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Cam01g1458 . 29 498 U-box Gene Family AT5G40140 51.1 8.8e-55 211.8
Cam08g1383 . 38 846 U-box Gene Family AT1G76390 61.5 2.7e-270 928.3
Cam08g1383 . 47 846 U-box Gene Family AT1G20780 62.0 3.2e-279 958.0
Cam08g2190 . 1 780 U-box Gene Family AT1G27910 62.6 9.2e-268 919.8
Cam11g1412 . 1 767 U-box Gene Family AT1G27910 62.3 8.9e-263 903.3
Cam01g1801 . 444 1035 U-box Gene Family AT5G67530 74.2 2.9e-261 897.9
Cam05g0242 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cam10g1838 . 12 162 U-box Gene Family AT5G67530 50.3 9.3e-42 168.7
Cam01g1878 . 4 803 U-box Gene Family AT5G65500 50.1 2.6e-209 725.7
Cam05g0451 . 61 573 U-box Gene Family AT1G04510 74.2 2.4e-219 758.4
Cam05g0451 . 61 542 U-box Gene Family AT2G33340 73.3 2.8e-206 714.9
Cam07g0205 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
Cam10g1516 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.3
Cam02g1298 . 213 857 U-box Gene Family AT2G23140 66.6 8.5e-126 448.0
Cam08g2190 . 1 778 U-box Gene Family AT1G24330 59.7 5.4e-244 840.9
Cam11g1412 . 1 755 U-box Gene Family AT1G24330 58.2 2.6e-230 795.4
Cam08g2190 . 1 777 U-box Gene Family AT1G67530 59.4 1.5e-241 832.8
Cam11g1412 . 1 756 U-box Gene Family AT1G67530 57.4 1.4e-226 783.1
Cam01g2299 . 1 362 U-box Gene Family AT4G21350 62.6 4.8e-121 431.4
Cam07g0206 . 135 455 U-box Gene Family AT3G07360 54.6 1.2e-78 290.4
Cam07g0630 . 265 452 U-box Gene Family AT1G71020 70.9 8.2e-73 271.6
Cam01g0623 . 635 834 U-box Gene Family AT1G71020 55.9 5.0e-54 209.1
Cam03g0158 . 281 450 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Cam05g2319 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Cam02g2095 . 255 425 U-box Gene Family AT1G71020 57.6 7.7e-47 185.3
Cam07g0630 . 16 656 U-box Gene Family AT1G23030 56.6 6.3e-110 395.2
Cam01g0623 . 421 1024 U-box Gene Family AT1G23030 52.0 2.2e-83 307.0
Cam03g0158 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Cam02g2095 . 93 635 U-box Gene Family AT2G28830 50.6 2.8e-99 359.8
Cam03g0158 . 24 689 U-box Gene Family AT3G46510 68.0 1.3e-169 593.6
Cam02g2095 . 3 638 U-box Gene Family AT3G46510 66.4 8.7e-158 554.3
Cam05g2319 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Cam02g1021 . 36 640 U-box Gene Family AT3G46510 50.2 6.1e-87 318.9
Cam05g2319 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Cam02g2095 . 13 628 U-box Gene Family AT3G54850 57.1 3.9e-115 412.5
Cam03g0158 . 31 650 U-box Gene Family AT3G54850 55.6 2.0e-103 373.6
Cam02g1021 . 92 644 U-box Gene Family AT5G42340 64.2 7.2e-128 454.9
Cam04g0651 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cam03g0697 . 1 714 U-box Gene Family AT1G29340 68.0 1.1e-246 849.7
Cam05g1291 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Cam04g0511 . 4 422 U-box Gene Family AT3G52450 52.4 6.8e-119 424.5
Cam10g1792 . 1 403 U-box Gene Family AT3G52450 50.9 7.8e-115 411.0
Cam10g1792 . 1 403 U-box Gene Family AT2G35930 55.8 1.5e-120 429.9
Cam04g0511 . 7 422 U-box Gene Family AT2G35930 51.4 7.9e-117 417.5
Cam05g1176 . 9 424 U-box Gene Family AT3G19380 64.4 2.0e-147 519.2
Cam05g1176 . 1 424 U-box Gene Family AT1G49780 64.6 5.9e-152 534.3
Cam01g1597 . 1 407 U-box Gene Family AT5G64660 53.9 7.1e-121 431.0
Cam01g1597 . 1 407 U-box Gene Family AT5G09800 50.8 1.8e-105 379.8
Cam05g2861 . 1 454 U-box Gene Family AT3G49810 63.2 6.1e-155 544.3
Cam08g2137 . 1 454 U-box Gene Family AT3G49810 63.0 3.0e-154 542.0
Cam08g2137 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Cam05g2861 . 1 454 U-box Gene Family AT5G65920 61.5 5.5e-148 521.2
Cam05g0179 . 82 953 U-box Gene Family AT2G45910 53.0 2.5e-234 808.9
Cam11g0174 . 4 726 U-box Gene Family AT2G19410 50.2 8.1e-211 730.7
Cam01g0472 . 65 841 U-box Gene Family AT4G25160 51.8 1.2e-217 753.4
Cam09g1920 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Cam01g1458 . 29 498 U-box Gene Family AT5G40140 51.1 8.8e-55 211.8
Cam08g1383 . 38 846 U-box Gene Family AT1G76390 61.5 2.7e-270 928.3
Cam08g1383 . 47 846 U-box Gene Family AT1G20780 62.0 3.2e-279 958.0
Cam08g2190 . 1 780 U-box Gene Family AT1G27910 62.6 9.2e-268 919.8
Cam11g1412 . 1 767 U-box Gene Family AT1G27910 62.3 8.9e-263 903.3
Cam01g1801 . 444 1035 U-box Gene Family AT5G67530 74.2 2.9e-261 897.9
Cam05g0242 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cam10g1838 . 12 162 U-box Gene Family AT5G67530 50.3 9.3e-42 168.7
Cam01g1878 . 4 803 U-box Gene Family AT5G65500 50.1 2.6e-209 725.7
Cam05g0451 . 61 573 U-box Gene Family AT1G04510 74.2 2.4e-219 758.4
Cam05g0451 . 61 542 U-box Gene Family AT2G33340 73.3 2.8e-206 714.9
Cam07g0205 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009140 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 0 2 1 1 33