Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0679 ATGACGTCTGAGAATTCTAGTGGAGAAAAGACATCAAGAAAGAGGCGAAATGGGTATGTTTCTGTAGTGGACACTTTGAACAAGTGGAAGAAGTTGAACAATCAATTGGAGGATTTGGCAAAAGATGGAGTAGAAGAAATTCGTAGAGTTCCAGCCAAGGGCTCTAAGAAGGGTTGCATGAGAGGGAAAGGAGGTCCTCAGAATTCAGATTGTAATTTCAGAGGTGTTAGACAGAGGACTTGGGGAAAGTGGGTGGCTGAAATTAGAGAGCCAATTGCTAGTAATAATACCCGTGTGAAGAAGAAAGGTAGTCGTTTATGGCTTGGCACTTTTGCCACTGCTCATCAGGCTGCTCTTGCTTATGATGAAGCTGCTAAAGCCATGTATGGCCCTTTTGCCCGTCTCAATTTTCCCGATTCTTCATCTTCTCCTCTGAAACCAGTAATAGTAGAGCATTCTGATTCGATATCCCCAGTTGCTTCTTCCTCCTCGTCTTCTTCCATTTTCAATGGACTATCTGCAGAGAAAATGAACTGCTGTTATTCAATGGATAAGCAAGAGAATTGTGGGTATGAATCAATGGAGGAACTGAAGGTGAAAGTGGAAGAAACAGCAAGAAATAGAGTCAATTATACAGATGCTACATTTTATGATTCTAACATCGGTAACAGATTTACAGAAGGGAATATCAAGGAAGGATTAGCTGATGTTGTAAGAAGTCGTGATATTAATAGAGATAGCCATGATCAGAATGACCCTTCTGAGCTTTGTTTCAAATTTGAAGCTATGGATACAAATGGCTGCAATGACTTAAACGAATGCAATCAATATGTGCTACAGAAATTTCAAAGTGATCCATATGCAAGAACTTACTGGATTCCGGCTGAGTGGGAGATCGGCGATCTTGGGTCCGCGCCGGTGATGGAAGGAAAGCCAATGGAGATAGAGAGCTATGGAGATTGTATGGCCTTCAACCGTGATCTGAGTTTGTTGCTGGATCGGCAAAAACACATGGGAGTTGGAGACCAAAGAGTTGATGATTGTAACTTCGAGTTTTTGAGACCTGATTATGATTTTGGGTTGGAGGAGGAACGCAAGTGGCTTGATTTATGGTTCCGTGGATGA 1125 42.04 MTSENSSGEKTSRKRRNGYVSVVDTLNKWKKLNNQLEDLAKDGVEEIRRVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASNNTRVKKKGSRLWLGTFATAHQAALAYDEAAKAMYGPFARLNFPDSSSSPLKPVIVEHSDSISPVASSSSSSSIFNGLSAEKMNCCYSMDKQENCGYESMEELKVKVEETARNRVNYTDATFYDSNIGNRFTEGNIKEGLADVVRSRDINRDSHDQNDPSELCFKFEAMDTNGCNDLNECNQYVLQKFQSDPYARTYWIPAEWEIGDLGSAPVMEGKPMEIESYGDCMAFNRDLSLLLDRQKHMGVGDQRVDDCNFEFLRPDYDFGLEEERKWLDLWFRG 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21077689 21078985 + CaPI482276_04g006790.1 Cam04g0679 124757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0679 374 SUPERFAMILY DNA-binding domain 72 140 IPR016177 GO:0003677(InterPro)
Cam04g0679 374 CDD AP2 71 140 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0679 374 Gene3D AP2/ERF domain 72 139 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0679 374 Pfam AP2 domain 72 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0679 374 ProSiteProfiles AP2/ERF domain profile. 72 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0679 374 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 283 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cam04g0679 374 SMART rav1_2 72 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0679 374 FunFam Ethylene-responsive transcription factor 2 71 139 - -
Cam04g0679 374 Coils Coil 194 214 - -
Cam04g0679 374 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0679 374 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1166 Cam-Chr2:22880511 Cam04g0679 Cam-Chr4:21077689 6.70E-40 dispersed
Cam04g0679 Cam-Chr4:21077689 Cam05g2040 Cam-Chr5:29094288 1.60E-28 dispersed
Cam11g0625 Cam-Chr11:7791580 Cam04g0679 Cam-Chr4:21077689 1.90E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51753 PF00847 AP2 7.50E-15 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0679 - - - 0.0