Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam04g0679 | ATGACGTCTGAGAATTCTAGTGGAGAAAAGACATCAAGAAAGAGGCGAAATGGGTATGTTTCTGTAGTGGACACTTTGAACAAGTGGAAGAAGTTGAACAATCAATTGGAGGATTTGGCAAAAGATGGAGTAGAAGAAATTCGTAGAGTTCCAGCCAAGGGCTCTAAGAAGGGTTGCATGAGAGGGAAAGGAGGTCCTCAGAATTCAGATTGTAATTTCAGAGGTGTTAGACAGAGGACTTGGGGAAAGTGGGTGGCTGAAATTAGAGAGCCAATTGCTAGTAATAATACCCGTGTGAAGAAGAAAGGTAGTCGTTTATGGCTTGGCACTTTTGCCACTGCTCATCAGGCTGCTCTTGCTTATGATGAAGCTGCTAAAGCCATGTATGGCCCTTTTGCCCGTCTCAATTTTCCCGATTCTTCATCTTCTCCTCTGAAACCAGTAATAGTAGAGCATTCTGATTCGATATCCCCAGTTGCTTCTTCCTCCTCGTCTTCTTCCATTTTCAATGGACTATCTGCAGAGAAAATGAACTGCTGTTATTCAATGGATAAGCAAGAGAATTGTGGGTATGAATCAATGGAGGAACTGAAGGTGAAAGTGGAAGAAACAGCAAGAAATAGAGTCAATTATACAGATGCTACATTTTATGATTCTAACATCGGTAACAGATTTACAGAAGGGAATATCAAGGAAGGATTAGCTGATGTTGTAAGAAGTCGTGATATTAATAGAGATAGCCATGATCAGAATGACCCTTCTGAGCTTTGTTTCAAATTTGAAGCTATGGATACAAATGGCTGCAATGACTTAAACGAATGCAATCAATATGTGCTACAGAAATTTCAAAGTGATCCATATGCAAGAACTTACTGGATTCCGGCTGAGTGGGAGATCGGCGATCTTGGGTCCGCGCCGGTGATGGAAGGAAAGCCAATGGAGATAGAGAGCTATGGAGATTGTATGGCCTTCAACCGTGATCTGAGTTTGTTGCTGGATCGGCAAAAACACATGGGAGTTGGAGACCAAAGAGTTGATGATTGTAACTTCGAGTTTTTGAGACCTGATTATGATTTTGGGTTGGAGGAGGAACGCAAGTGGCTTGATTTATGGTTCCGTGGATGA | 1125 | 42.04 | MTSENSSGEKTSRKRRNGYVSVVDTLNKWKKLNNQLEDLAKDGVEEIRRVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASNNTRVKKKGSRLWLGTFATAHQAALAYDEAAKAMYGPFARLNFPDSSSSPLKPVIVEHSDSISPVASSSSSSSIFNGLSAEKMNCCYSMDKQENCGYESMEELKVKVEETARNRVNYTDATFYDSNIGNRFTEGNIKEGLADVVRSRDINRDSHDQNDPSELCFKFEAMDTNGCNDLNECNQYVLQKFQSDPYARTYWIPAEWEIGDLGSAPVMEGKPMEIESYGDCMAFNRDLSLLLDRQKHMGVGDQRVDDCNFEFLRPDYDFGLEEERKWLDLWFRG | 374 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 21077689 | 21078985 | + | CaPI482276_04g006790.1 | Cam04g0679 | 124757 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam04g0679 | 374 | SUPERFAMILY | DNA-binding domain | 72 | 140 | IPR016177 | GO:0003677(InterPro) | |
Cam04g0679 | 374 | CDD | AP2 | 71 | 140 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam04g0679 | 374 | Gene3D | AP2/ERF domain | 72 | 139 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam04g0679 | 374 | Pfam | AP2 domain | 72 | 130 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam04g0679 | 374 | ProSiteProfiles | AP2/ERF domain profile. | 72 | 138 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam04g0679 | 374 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 6 | 283 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Cam04g0679 | 374 | SMART | rav1_2 | 72 | 144 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam04g0679 | 374 | FunFam | Ethylene-responsive transcription factor 2 | 71 | 139 | - | - | |
Cam04g0679 | 374 | Coils | Coil | 194 | 214 | - | - | |
Cam04g0679 | 374 | PRINTS | Ethylene responsive element binding protein signature | 104 | 120 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam04g0679 | 374 | PRINTS | Ethylene responsive element binding protein signature | 73 | 84 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g1166 | Cam-Chr2:22880511 | Cam04g0679 | Cam-Chr4:21077689 | 6.70E-40 | dispersed | |
Cam04g0679 | Cam-Chr4:21077689 | Cam05g2040 | Cam-Chr5:29094288 | 1.60E-28 | dispersed | |
Cam11g0625 | Cam-Chr11:7791580 | Cam04g0679 | Cam-Chr4:21077689 | 1.90E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51753 | PF00847 | AP2 | 7.50E-15 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam04g0679 | - | - | - | 0.0 |