Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0714 ATGGCTTCCCAAACAGAGCCTTGGCTAATGGAAAACGGAAGCCTCAAGCGTTTAACCAAAGAGCATCGACATGGCCATGGTCGAACAGCTCACAACATGTCGTCCTCTTCCTTACGCAAAAAGTCCGATCTAACCCTCGTCTCCAAAGTCCAATTCGGCTGTCTCCGCAAGTTTCTTATCAATCTTCAGGAGGTCATTTTGGGAACTAAACTTTCCATTCTCTTCCCTGCGATTCCGCTTGCTATTGTCGCTCAGAGTTTTGGCTTTGGAAGACCTTGGATTTTTGCATTAAGCTTGCTTGGCCTCACGCCATTGGCTGAACGTGTCAGCTTTCTGACCGAGCAAATCGCTTATTTCACTGGCCCAACAGTTGGGGGGCTTTTGAATGCAACATGTGGAAATGCAACGGAGCTGATAATTGCAATTCTTGCACTGACACAAAGAAAGATAGACGTGGTGAAGTATTCTCTTTTGGGTTCTGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTCTTTTGTGGTGGCATTGCAAATCTTAGAAGGGAGCAGAATTATGACAGAAGGCAAGCTGATGTCAACTCCCTGATGCTGATGCTTTCGTTACTGTGCCACCTATTGCCGTTATTGTTTGGCTACGCCGCCGCCTCCTCCGCCTCCACGGCCGCCGCCTCCACCCTCCACCTGTCCAGAGCCAGCAGCATTGTAATGCTCTCTGCTTACATCGCTTACTTGGTCTTCCAACTTTGGACTCATCGACAACTATTTGAAGCCGAGGAAGCTGAAGACGACGACGCTCCTGAAGAAGAGGCAGTGATTGGATTCTGGAGCGCATTTGCATGGCTTGCAGGAATGACACTCCTTATTGCTTTGCTGTCCGAATACGTTGTCAACACAATTGAGGAAGCATCTACCACTTGGGGTTTGTCAGTGAGTTTCCTTAGCATAATCTTGCTCCCTATAGTCGGAAATGCGGCCGAACACGCCGGGGCTATCATATTTGCCTTCAAGAATAAGTTGGACATATCTTTAGGGGTTGCTTTGGGATCTGCAACACAAATTGCACTGTTTGTGATTCCACTTTGTGTGATAGTTGCTTGGACAATGGGAGTGGACATGGACCTGAATTTCAACCTGATGGAAACAGGGTCACTTGGATTGGCCATTATTGCCACAGCCTTCACTTTACAAGATGGAACCTCTCACTATATTAAAGGCCTTGTTCTTCTTCTTTGCTACATTATCATTGCTGCTTGCTTCTTTGTTTCCAAGACACAAGAAGATAATGACAATACTCCCAACTTGAGACTCCAATCTTCAAACCAAGCAATCTTCAGAGCTTAA 1347 46.33 MASQTEPWLMENGSLKRLTKEHRHGHGRTAHNMSSSSLRKKSDLTLVSKVQFGCLRKFLINLQEVILGTKLSILFPAIPLAIVAQSFGFGRPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALTQRKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANLRREQNYDRRQADVNSLMLMLSLLCHLLPLLFGYAAASSASTAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAEEAEDDDAPEEEAVIGFWSAFAWLAGMTLLIALLSEYVVNTIEEASTTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVAWTMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLVLLLCYIIIAACFFVSKTQEDNDNTPNLRLQSSNQAIFRA 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21511717 21517229 + CaPI482276_04g007140.1 Cam04g0714 124792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0714 448 Gene3D - 122 272 IPR044880 -
Cam04g0714 448 Gene3D - 273 423 IPR044880 -
Cam04g0714 448 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 23 426 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cam04g0714 448 FunFam Vacuolar cation/proton exchanger 122 267 - -
Cam04g0714 448 NCBIfam calcium/proton exchanger 76 422 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cam04g0714 448 FunFam Vacuolar cation/proton exchanger 268 423 - -
Cam04g0714 448 Pfam Sodium/calcium exchanger protein 93 251 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0714 448 Pfam Sodium/calcium exchanger protein 279 422 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1103 Cam-Chr2:20285733 Cam04g0714 Cam-Chr4:21511717 1.30E-93 transposed
Cam07g1142 Cam-Chr7:25850416 Cam04g0714 Cam-Chr4:21511717 1.10E-91 transposed
Cam10g0392 Cam-Chr10:6250148 Cam04g0714 Cam-Chr4:21511717 2.30E-94 transposed
Cam10g2167 Cam-Chr10:35147416 Cam04g0714 Cam-Chr4:21511717 1.30E-161 wgd
Cam03g0076 Cam-Chr3:1726218 Cam04g0714 Cam-Chr4:21511717 3.20E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0714 K07300 - csv:101213857 783.482