Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0737 GAAAATCATGATGATGGTGCTCAAGTGATGACAAATGATGATATTTTGGGTGATGAGATACCTGAGGACCAAGAACGTGCTTTGAAACAATTTTGCTATCAAATGCTTAAATTGAATGCTGGAGCAAGAGCAAATTTGCAATTTCCTGGGTCGCATCCAGTGTCTCTTAACAGAGACAATCTTCAACTGCTAAGGCAACGCTATTATTATGCCACATGGAAAGCCGATGGAACAAGATATATGATGCTAATTACCATGGATGGATGCTACTTGATTGACAGGGGTTTTAAATTTCGAAGAGTCCAAATGAGATTCCCATACAGAAATGCAAATGATGGCCAAGGTGAGAAGATTCACCACTATACACTACTTGATGGAGAAATGATTATTGATACTATGCCAGACTCGCAGAAGCAAGAGAGAAGATATCTTATATATGATATGATGACAATTAATCATGTTCCGGTCATTGAGCGTCCTTTCTACGAACGGTGGAAGATGCTTGAAAAAGAAGTGATCGAACCTCGCAATTCTGAGCGCCAGAGTATTTACCAAAGCAGGAACCCTCATTATAGATATGACCTAGAGCCATTCAGGGTGAGGAGAAAAGATTTTTGGTTGCTCTCCACGGTTACCAAACTTTTGAAGGAGTTCATACCTAGGCTTTCACATGATGCTGATGGTCTGATATTTCAGGGGTGGGATGATGCTTATGTTCCTCGAACTCATGAGGGTCTTTTAAAGTGGAAATATCCAGAAATGAACTCAGTCGACTTCCTATTCGAGTTGGGTGAAGATGATTCTGAGGTTCTTATTTTGTTTGAACGAGGAAAGAGGAAGACCATGGAAGGAAATAGGGTTAAGTTCAAAGCTGAATGTTGGCTGGTCGAGTACTGGGGCTTTGATGACCACCAGCTCTTGCATATGTGGCTAATTTTTGCTGGCAAGCTATCTATCTTTCTCAACCTATATTCTCAAGGTTTCATAATATATGCCAAGATTCCAGGAAAATCGGGAGATGGGGATCCCTCCTTTTATTCAGGAAAGATTGTCGAGTGCTCTTGGGATTCTGATGAGCAAGTATGGGTCTGCATGCGTATCAGGACAGACAAAACAACTCCTAATGATTTCAATACTTATAAAAAGGTCATGCGGAGCATTAGAGACAATATCACGGAGGAGGATTTGTTGAAAGAGATTCATGAGATCATACGCTTGCCCATGTATGCAGATAGGATAAGGATTGATAGTAAAGCAGCTCAACATACGAATTCAACACGACGGAGCGGAAAGACGCCACTGCAGTTGGATTACACGGATCCTTTCTGGGGGTTTTGGCAATTTGATGTTGTTGGCTTTGCGTTTCATCTTGCGGAGCTACGGTGTGGCGGATTCATGAAATTCTCGGTGATTTTAGCTCTTCTGATTTGTCTAATTCTCTTCGTTCCGTTGAAATGCATTCACGGCGAGGAGCCCAAGAAAAACAAATTTCGGGAACGAGAAGCCACGGATGATGCCCTTGGATACCCTGAGATAGACGAGGATGCTTTGTTGAATACACAATGTCCAAAGAATTTGGAGCTAAGATGGCAAACAGAAGTGAGTTCTAGCATATATGCTACACCCTTGATCGCTGATATTAACAGTGATGGGAAACTTGAGATAGTGGTTCCATCTTTTGTTCACTACCTTGAGGTTCTAGAAGGTTCTGATGGAGACAAAATGCCAGGGTGGCCTGCTTTCCATCAGTCGACTGTGCATGCTAGTCCTCTTCTATATGATATAGACAAAGATGGTGTGAGGGAAATAGCTTTGGCCACATACAATGGAGAAGTGCTCTTTTTCAGGGTGTCAGGATATATGATGACAGACAAGTTAGAGATACCACGTCGCCGTGTGCGCAAGAATTGGTATGTGAGTTTAAATCCAGATCCAGTGGACCGGTCTTATCCAGATGTTCAAGATGAACAACTTGTCAGAGAAGCAACTAAGACAAAATCAATCTCTCAAACAAATGGAAGTGTTCCAGAGTTAAACCATACAACTGAGACTACGATAAATGGAAGTGTGACCGAACTAAATACTTCGGCTGCCATACCAACTCAAATGTTGAATATTTCAGATACAGTGAATAATAGTATGGTGAATGACAGCAAAGTTGAACCGGATATTGTCCTGCCTACAAGCATGGCCAACAACGCTTCTATCAATGCTACAACTGGAATACTCGATAATAAGAATGGAACTGGGACGAGTAGACGAATTTTGGAAGTTAGTGACTCCAAACGATCTCAAGAAGATGGTTCTGGGTCCAAGGCAGATGGTAGTGGAGATGAGCATGTTGCCACAGTTGAAAATGATGAAGCTTTGGAAGCAGAAGCTGATTCATCATTTGATATATTCCGTGAAAATGATGAGCTGGCTGATGAGTATAATTATGACTATGATGATTATGTTGATGAATCCATGTGGGGAGATGAGGAGTGGACTGAAGTTAAGCATGAAAAAGTGGAGGAATATGTGGATATTGATGCACATTCATTGTGCACTCCTGTGATAGCTGACATTGACAACGATGGGATATCTGAAATGATTGTAGCTGTTTCATACTTTTTTGATCATGAGTACTATGATAACCCAGAGCACAAGAAAGAATTGGGTGATCTTGACATTGGGAAATATGTAGCTGGGGCCATTGTTGTTTTCAATCTGGATACAAAGCAAGTGAAGTGGACGACTGAACTAGACTTGAGCACAGATTCTGCGAACTTTCGTGCTTATATATATTCCTCCCCTACTGTCATCGATTTGGATGGTGATGGGAATCTGGATATTCTTGTTGGCACATCCTTTGGCTTGTTCTATGTCTTGGACCATCATGGCAAGGTGAGAGAAAAGTTTCCTCTTGAAATGGCTGATATTCAGGGAGCTGTTGTTGCAGCTGATATCAATGATGATGGGAAAATTGAACTTGTGACTGCTGATACACACGGAAATGTTGCTGCCTGGACTGCTCAAGGTCAAGAAATTTGGGAAAAAAATCTAAAGAGCCTTATACCGCAGGGTCCATCCATTGGTGATGTTGATGGGGACGGTCGTACTGATGTGGTGGTGCCGACGGTATCAGGAAATATATATGTTCTCAGTGGCAAGGATGGGTCATTTGTTCGTCCTTACCCCTATAGAACCCATGGAAGAGTGATGAATCAAGTTCTTCTTGTTGATCTGAACAAACGCGATGACAAAAAGAAGGGGCTTACTCTGGTCACATCATCGTTTGATGGGTATTTGTATCTCATTGATGGACCGACATCATGTGCTGATGTTATTGACATTGGCGAGACTTCATATAGCATGGTTCTGGCTGACAATGTTGATGGTGGAGATGATCTTGATCTTATTGTCTCAACCATGAATGGAAATGTTTTCTGCTTTTCAACTCCTGCTCCACATCATCCTCTCAAGGCATGGAGATCAACTAATCAAGGAAGAAACAACAATGCAGTCCGGCACAACCGTGAAGGTGTTTTTGTTTCACATTCATCTAGAACTTTCCGTGACGAGGAAGGCAAGAACTTCTGGGTTGAGATTGAGATTGTAGACCGTTACAGAAATCCTTCAGGGACTCAAGCACCATATAACGTCACTACAACCTTGATGGTTCCTGGCAATTACCAGGGAGAGAGGAAAATAAAACAAAACCAAATCTTCAAAGAACCAGGCAAACATCGGATAAAACTTCCAACCGTCAGTGTTAGAACAACAGGCACTGTTTTGGTGGAGATGGTTGACAAGAATGGACTCTATTTTTCGGATGAGTTCTCCCTCACATTCCACATGTATTACTATAAGCTCCTGAAGTGGCTTCTCGTCCTCCCGATGCTTGGAATGTTTGGTGTGCTCATGATCCTTCGCCCACAAGAGCCTGTGCCATTGCCATCATTTTCCCGGAACACTAACCTATGA 3966 42.16 ENHDDGAQVMTNDDILGDEIPEDQERALKQFCYQMLKLNAGARANLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRGFKFRRVQMRFPYRNANDGQGEKIHHYTLLDGEMIIDTMPDSQKQERRYLIYDMMTINHVPVIERPFYERWKMLEKEVIEPRNSERQSIYQSRNPHYRYDLEPFRVRRKDFWLLSTVTKLLKEFIPRLSHDADGLIFQGWDDAYVPRTHEGLLKWKYPEMNSVDFLFELGEDDSEVLILFERGKRKTMEGNRVKFKAECWLVEYWGFDDHQLLHMWLIFAGKLSIFLNLYSQGFIIYAKIPGKSGDGDPSFYSGKIVECSWDSDEQVWVCMRIRTDKTTPNDFNTYKKVMRSIRDNITEEDLLKEIHEIIRLPMYADRIRIDSKAAQHTNSTRRSGKTPLQLDYTDPFWGFWQFDVVGFAFHLAELRCGGFMKFSVILALLICLILFVPLKCIHGEEPKKNKFREREATDDALGYPEIDEDALLNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLEIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRRVRKNWYVSLNPDPVDRSYPDVQDEQLVREATKTKSISQTNGSVPELNHTTETTINGSVTELNTSAAIPTQMLNISDTVNNSMVNDSKVEPDIVLPTSMANNASINATTGILDNKNGTGTSRRILEVSDSKRSQEDGSGSKADGSGDEHVATVENDEALEAEADSSFDIFRENDELADEYNYDYDDYVDESMWGDEEWTEVKHEKVEEYVDIDAHSLCTPVIADIDNDGISEMIVAVSYFFDHEYYDNPEHKKELGDLDIGKYVAGAIVVFNLDTKQVKWTTELDLSTDSANFRAYIYSSPTVIDLDGDGNLDILVGTSFGLFYVLDHHGKVREKFPLEMADIQGAVVAADINDDGKIELVTADTHGNVAAWTAQGQEIWEKNLKSLIPQGPSIGDVDGDGRTDVVVPTVSGNIYVLSGKDGSFVRPYPYRTHGRVMNQVLLVDLNKRDDKKKGLTLVTSSFDGYLYLIDGPTSCADVIDIGETSYSMVLADNVDGGDDLDLIVSTMNGNVFCFSTPAPHHPLKAWRSTNQGRNNNAVRHNREGVFVSHSSRTFRDEEGKNFWVEIEIVDRYRNPSGTQAPYNVTTTLMVPGNYQGERKIKQNQIFKEPGKHRIKLPTVSVRTTGTVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLVLPMLGMFGVLMILRPQEPVPLPSFSRNTNL 1321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21766538 21788312 - CaPI482276_04g007370.1 Cam04g0737 124815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0737 1321 CDD Adenylation_mRNA_capping 23 251 IPR001339 GO:0004484(InterPro)|GO:0005524(InterPro)|GO:0006370(InterPro)
Cam04g0737 1321 SUPERFAMILY Integrin alpha N-terminal domain 519 1077 IPR028994 -
Cam04g0737 1321 PANTHER - 490 1308 IPR045232 -
Cam04g0737 1321 SUPERFAMILY Nucleic acid-binding proteins 253 413 IPR012340 -
Cam04g0737 1321 FunFam mRNA capping enzyme, putative 11 248 - -
Cam04g0737 1321 Gene3D - 341 406 IPR012340 -
Cam04g0737 1321 Pfam mRNA capping enzyme, catalytic domain 52 250 IPR001339 GO:0004484(InterPro)|GO:0005524(InterPro)|GO:0006370(InterPro)
Cam04g0737 1321 Gene3D - 802 1152 IPR015943 GO:0005515(InterPro)
Cam04g0737 1321 ProSiteProfiles ATP-dependent DNA ligase family profile. 134 279 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cam04g0737 1321 Pfam mRNA capping enzyme, C-terminal domain 254 397 IPR013846 -
Cam04g0737 1321 MobiDBLite consensus disorder prediction 758 780 - -
Cam04g0737 1321 Gene3D DNA ligase/mRNA capping enzyme 11 250 - -
Cam04g0737 1321 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 12 251 - -
Cam04g0737 1321 Pfam FG-GAP-like repeat 982 1038 IPR013517 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0737 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g852 . . . . . Bpe03g01015 . Bma10g00319 . . Cma03g00375 . Car03g00328 Car07g01025 Sed14g0660 Cpe10g00935 . Bhi03g02108 Tan03g0830 Cmetu08g1543 . Hepe04g0778 . . Cla04g00726 Cam04g0737 Cec04g0863 Cco04g0913 Clacu04g0781 Cmu04g0770 Cre04g0825 . . . . . Csa04g01589 Chy08g00661 . Blo07g01154 . . Bda05g00942 . . . . . Cmo03g00384 . . . . . . Cpe19g00296 . . . . . . . . . . . . . . . . . Cme08g02497
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g1749 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G50110 61.8 1.4e-189 659.8
Cam02g0659 . 123 692 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Cam10g1514 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.4 8.4e-159 557.0
Cam08g1249 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Cam08g1249 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Cam06g1369 . 1 1244 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1082.8
Cam09g1020 . 87 374 Protein tyrosine phosphatase (PTP) family AT1G71860 66.4 7.5e-113 404.1
Cam06g1976 . 16 903 Protein tyrosine phosphatase (PTP) family AT5G23720 65.6 0.0e+00 1094.0
Cam06g0590 . 75 212 Protein tyrosine phosphatase (PTP) family AT3G06110 58.0 2.6e-42 168.7
Cam09g2119 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cam05g2347 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 2.1e-116 415.6
Cam07g0497 . 10 256 Protein tyrosine phosphatase (PTP) family AT3G10940 68.3 4.8e-97 351.3
Cam10g1259 . 142 590 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 1.6e-203 705.7
Cam02g1872 . 98 299 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 1.8e-74 276.2
Cam09g1098 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cam03g1077 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 9.2e-55 210.7
Cam10g0240 . 86 418 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 5.0e-101 364.8
Cam11g0207 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 6.3e-80 294.7
Cam11g0207 . 27 209 Protein tyrosine phosphatase (PTP) family AT5G56610 51.6 2.2e-45 179.1
Cam02g1872 . 132 300 Protein tyrosine phosphatase (PTP) family AT4G03960 78.1 2.3e-77 285.4
Cam09g1098 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.0e-70 260.8
Cam03g1077 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Cam03g1077 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 71.1 4.2e-79 291.2
Cam02g1872 . 123 295 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Cam07g0301 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.3e-63 239.2
Cam10g1514 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.4 8.4e-159 557.0
Cam02g0659 . 89 692 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 3.3e-220 761.5
Cam01g1749 . 115 690 Protein tyrosine phosphatase (PTP) family AT3G19420 60.2 1.0e-197 686.8
Cam01g1749 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G50110 61.8 1.4e-189 659.8
Cam02g0659 . 123 692 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Cam06g1369 . 1 1244 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1082.8
Cam08g1249 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Cam08g1249 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Cam02g2272 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 3.0e-69 258.8
Cam10g0176 . 92 380 Protein tyrosine phosphatase (PTP) family AT2G35320 61.2 7.8e-101 364.0
Cam04g0737 . 10 420 Protein tyrosine phosphatase (PTP) family AT3G09100 65.7 1.5e-157 553.5
Cam04g0737 . 10 420 Protein tyrosine phosphatase (PTP) family AT5G01290 60.5 1.6e-140 496.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007157 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 0 1 2 1 1 0 1 1 1 0 1 3 3 1 37