Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0750 ATGGAGGGTGCGGCCGCTGCCGAGATTGGTGCTACCACCGCCGAAGGAGGAGGAGTAGATGCATGTGATGCCGTCGCTTCCGTCGCCGACTGCGGCAGCGGGGACGACGCAGTGCCGATGGTAGGCGAGGGAGAAACAACTGGTGGCCGTGGCGGCAAAGATAGAGTGAAGGGACCTTGGTCTCCTGAAGAGGATGCGATACTCAGCCGCCTTGTGAGTAAGTTCGGTGCGAGGAATTGGAGCTTGATTGCTCGGGGAATCGCTGGGCGATCCGGAAAGTCTTGTCGCCTTAGGTGGTGTAATCAACTCGACCCTTCCGTGAAACGCAAGCCATTTACTGATGAGGAGGACAGGATCATTGTAGCAGCCCATGCTGTACATGGAAATAAATGGGCAGCAATAGCTCGGCTCTTGCCTGGGAGAACGGATAATGCTATAAAGAATCATTGGAATTCCACTTTACGACGTCGATGCACAGAGCTTGAAAGAATCAAGTTAGAATCTGGGAATGCAGTGGATGATGCTAGTTTAGAAAAAACTAAGGGATCATCTGAAGAAACCCTTTCATGTGGAGATGTGAATTCCTTTAAATCCTTGGATGGAAAAGACGCCTGTTCACGGGAGCATTTGGACGATCAATATGAAGACAAGGTCCCTATTGCCATGGAGGGCCAATTTACTCATGAAGTCAAAGAGCAACCAACTCTTTTCAGGCCAGTGGCTCGAGTAAGTGCTTTTAGTGTATATAACCCTTTGGATAGCCAAGAACCTTTGAGGCCATTTTTACGACCTGTTCCAATGCAAGGGCCATTGATTCAAGTGTCAAAACCAGATGTTGAAGCTAGCAAATTTCTTGAAGGGGTTTATGGTGATCGATCAGTGCCTCATCAATGTGGTCATGGTTGTTGTAAGAGTCATAACCAGGGATCTCCTCTAGAATCGTTATTAGGGCCAGAATTTGTGGACTTCTCAGAGCCTCCACCATCCTTCCCCAGTTTTGAACTAGCTGCAATTGCAACTGACATAAGTAACCTTGCTTGGCTGAAAAGTGGGTTGGAGAATGGCAGTGTTAGAGCTATGGGAGATTCGGCTGGAAGATTAAATGGTATGATTCTCTTACCTCAGCTGCATATGCTTGTTCTTAAAGTCACTGGGAACTGGGATTCAGGTGAATTGAAGCTACAGCCTTCATCATGCATGAGTAAAGGTTATGGAAATGTTTCTGATGTTTTGTTGAACAAACCCATGAAAGCTAATCCATATTTCAACGGTTGTGGAGTGAATAAAGCAACAATTAACATTCGGGTCCTCGAGGGAACCTTGTTGTCTCTTTACAAAGCTTTAGAGACGGCCGGAGCTGATTTGGAGAAAGAGTGGCAGCGGGCGGCGGCGGCGGCAACCGCGGAGAGGGGAAGTGGAGTTGGTGAAGTGAAGGTGAAGTTGGAGAGAGATTGTAGGATTTGCCATTTGGGTTTAGAGAGCAATAGCAGTGAGTTTGGAGTTGGAATTGAATTGGGTTGTTGTTGTAAGAATGATTTGGGTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACATGTGAGATATGTCATTCTATTGTAAGAAATGTAATGGTAGCACATGAATTTGAACAAACGGAGCAAGTCCATGGGTCGAACAATGGGACGGTATCAACGGCCACGGTTGCAGCGTCGGTGGCTGCCGCTCCTAGTGGTGGCCGGAGCTTTTGGCATGTTCACCGAGTCCTTAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTCATATCTTGGCTCTTTCATTTCAATGTGCCATCATAA 1839 47.09 MEGAAAAEIGATTAEGGGVDACDAVASVADCGSGDDAVPMVGEGETTGGRGGKDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRIIVAAHAVHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRCTELERIKLESGNAVDDASLEKTKGSSEETLSCGDVNSFKSLDGKDACSREHLDDQYEDKVPIAMEGQFTHEVKEQPTLFRPVARVSAFSVYNPLDSQEPLRPFLRPVPMQGPLIQVSKPDVEASKFLEGVYGDRSVPHQCGHGCCKSHNQGSPLESLLGPEFVDFSEPPPSFPSFELAAIATDISNLAWLKSGLENGSVRAMGDSAGRLNGMILLPQLHMLVLKVTGNWDSGELKLQPSSCMSKGYGNVSDVLLNKPMKANPYFNGCGVNKATINIRVLEGTLLSLYKALETAGADLEKEWQRAAAAATAERGSGVGEVKVKLERDCRICHLGLESNSSEFGVGIELGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTVSTATVAASVAAAPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21899487 21906227 + CaPI482276_04g007500.1 Cam04g0750 124828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0750 612 Pfam Myb-like DNA-binding domain 60 117 - -
Cam04g0750 612 FunFam MYB transcription factor 57 108 - -
Cam04g0750 612 MobiDBLite consensus disorder prediction 36 60 - -
Cam04g0750 612 Pfam RING-variant domain 485 536 IPR011016 GO:0008270(InterPro)
Cam04g0750 612 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 103 IPR017930 -
Cam04g0750 612 SUPERFAMILY RING/U-box 482 540 - -
Cam04g0750 612 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 158 IPR017930 -
Cam04g0750 612 CDD SANT 59 101 IPR001005 -
Cam04g0750 612 PANTHER MYB PROTEIN-RELATED 47 308 IPR050560 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cam04g0750 612 SUPERFAMILY Homeodomain-like 54 150 IPR009057 -
Cam04g0750 612 Gene3D - 111 157 - -
Cam04g0750 612 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 546 IPR013083 -
Cam04g0750 612 FunFam Transcription factor MYB44 111 157 - -
Cam04g0750 612 ProSiteProfiles Myb-like domain profile. 104 154 IPR001005 -
Cam04g0750 612 SMART sant 56 105 IPR001005 -
Cam04g0750 612 SMART sant 108 156 IPR001005 -
Cam04g0750 612 Gene3D - 56 108 - -
Cam04g0750 612 ProSiteProfiles Myb-like domain profile. 52 103 IPR001005 -
Cam04g0750 612 CDD SANT 111 154 IPR001005 -
Cam04g0750 612 ProSiteProfiles Zinc finger RING-CH-type profile. 477 543 IPR011016 GO:0008270(InterPro)
Cam04g0750 612 SMART ringv_2 484 537 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0750 Cam-Chr4:21899487 Cam07g0444 Cam-Chr7:6127461 7.80E-44 dispersed
Cam02g0052 Cam-Chr2:1636183 Cam04g0750 Cam-Chr4:21899487 1.20E-28 transposed
Cam04g1309 Cam-Chr4:26874073 Cam04g0750 Cam-Chr4:21899487 3.60E-34 transposed
Cam05g2619 Cam-Chr5:33736946 Cam04g0750 Cam-Chr4:21899487 7.20E-32 transposed
Cam08g0771 Cam-Chr8:8389735 Cam04g0750 Cam-Chr4:21899487 1.80E-31 transposed
Cam08g1083 Cam-Chr8:17172930 Cam04g0750 Cam-Chr4:21899487 1.70E-33 transposed
Cam11g0992 Cam-Chr11:17268044 Cam04g0750 Cam-Chr4:21899487 4.70E-35 transposed
Cam10g2129 Cam-Chr10:34863914 Cam04g0750 Cam-Chr4:21899487 1.40E-22 wgd
Cam11g0671 Cam-Chr11:8343860 Cam04g0750 Cam-Chr4:21899487 2.50E-31 wgd
Cam03g0101 Cam-Chr3:1996792 Cam04g0750 Cam-Chr4:21899487 4.50E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51759 PF13921 Myb_DNA-bind_6 5.40E-16 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0750 K09422 - csv:101212170 677.552