Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0776 ATGGCAGAAAACTTGGAGGTGTTTGGTTTCTGGCCAAGTCCATTTAGTCTGAGAGTGGAGTTGGCTCTCAAACTCAAAGGCATCCAATACCAATACTTTGAGGAAGATGTGCTGAACAATAAGAGCGATTTGCTGCTGAAATACAACCCAACCTACAAGAAGATTCCTGTTTTAGTCCACCATGGAAAATCCATTTCAGAGTCTCTTGTAATTCTCGAATACATTGAAGAAAACTGGAAACACAGCCCTATCTTGCCTCATAATCCTCATCAAAGAGCTCTTGCTAGGTTTTGGGCTAAGTATATCGATGGCAAGGTTGTGTCTACGATAGGGAAAGCTCCTGGAAGCAAAGGAGAAGAGATAGAGAAGGCTGTAGAAGAAGTGAAGGAGGCATTGGAACCACTTGAGAAAGAGCTTAAAAGCAACAAGTTTTTTGGGGGAGAAACAATTGGGTTTGTGGACATTGTAGGTATCCTCATAGCCTTTTGGTTTCCTGCCATTGAAGAAGCATTAGGGATTGAGCTGCTAACAACCCACAAATTTCCAAACCTAATACAATGGACTCAAGAGCTTGCCAACCACACTGTGGTGAAGGAGCTTCTCCCTAAAAAGGATAAGCTTGTTGCCCATTTGAAAACTGTTCATGGGAAAAACTAG 657 42.31 MAENLEVFGFWPSPFSLRVELALKLKGIQYQYFEEDVLNNKSDLLLKYNPTYKKIPVLVHHGKSISESLVILEYIEENWKHSPILPHNPHQRALARFWAKYIDGKVVSTIGKAPGSKGEEIEKAVEEVKEALEPLEKELKSNKFFGGETIGFVDIVGILIAFWFPAIEEALGIELLTTHKFPNLIQWTQELANHTVVKELLPKKDKLVAHLKTVHGKN 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22073507 22075585 - CaPI482276_04g007760.1 Cam04g0776 124854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0776 218 SFLD Main (cytGST) 2 215 - -
Cam04g0776 218 CDD GST_N_Tau 5 79 - -
Cam04g0776 218 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Cam04g0776 218 CDD GST_C_Tau 89 212 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cam04g0776 218 Gene3D Glutaredoxin 1 84 - -
Cam04g0776 218 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Cam04g0776 218 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 212 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cam04g0776 218 Coils Coil 118 138 - -
Cam04g0776 218 FunFam Tau class glutathione S-transferase 85 218 - -
Cam04g0776 218 FunFam Tau class glutathione S-transferase 1 87 - -
Cam04g0776 218 Gene3D - 85 218 - -
Cam04g0776 218 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Cam04g0776 218 SFLD Main.3: Omega- and Tau-like 2 215 IPR045073 -
Cam04g0776 218 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 211 IPR010987 -
Cam04g0776 218 Pfam Glutathione S-transferase, C-terminal domain 108 193 IPR004046 -
Cam04g0776 218 SUPERFAMILY GST C-terminal domain-like 77 215 IPR036282 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0776 K00799 - - csv:105434443 346.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0761 Cam-Chr4:21989190 Cam04g0776 Cam-Chr4:22073507 6.80E-83 dispersed
Cam04g0773 Cam-Chr4:22058581 Cam04g0776 Cam-Chr4:22073507 2.20E-81 dispersed
Cam04g0774 Cam-Chr4:22063855 Cam04g0776 Cam-Chr4:22073507 2.40E-48 dispersed
Cam04g0776 Cam-Chr4:22073507 Cam05g0289 Cam-Chr5:2752916 9.20E-56 dispersed
Cam04g0775 Cam-Chr4:22068479 Cam04g0776 Cam-Chr4:22073507 5.50E-49 tandem
Cam04g0776 Cam-Chr4:22073507 Cam04g0777 Cam-Chr4:22079882 8.80E-67 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam09g0600 . 1 210 Glutathione S-transferase Gene Family AT4G02520 60.1 4.7e-65 244.6
Cam09g0602 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 4.0e-64 241.5
Cam09g0601 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 8.7e-59 223.8
Cam09g0600 . 1 211 Glutathione S-transferase Gene Family AT2G02930 61.2 2.5e-66 248.8
Cam09g0602 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.7 1.2e-63 240.0
Cam09g0601 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 7.8e-60 227.3
Cam09g0602 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.7 1.9e-60 229.6
Cam09g0600 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 1.6e-59 226.5
Cam09g0601 . 5 206 Glutathione S-transferase Gene Family AT1G02950 51.7 2.5e-52 202.6
Cam09g0600 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.8 5.1e-64 241.1
Cam09g0602 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 1.1e-61 233.4
Cam09g0601 . 1 210 Glutathione S-transferase Gene Family AT1G02930 52.9 8.0e-57 217.2
Cam09g0600 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.2 2.1e-65 245.7
Cam09g0602 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.2 9.8e-63 236.9
Cam09g0601 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 8.5e-59 223.8
Cam09g0602 . 1 215 Glutathione S-transferase Gene Family AT2G47730 59.3 3.0e-69 258.8
Cam09g0600 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.7 6.9e-66 247.7
Cam09g0601 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.8 1.4e-61 233.4
Cam09g0603 . 1 214 Glutathione S-transferase Gene Family AT3G62760 57.9 5.8e-74 274.2
Cam09g0600 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 2.2e-48 189.5
Cam04g0773 . 3 214 Glutathione S-transferase Gene Family AT3G09270 54.2 8.5e-65 243.8
Cam04g0776 . 3 216 Glutathione S-transferase Gene Family AT3G09270 53.0 4.7e-63 238.0
Cam04g0761 . 6 216 Glutathione S-transferase Gene Family AT3G09270 52.4 1.0e-62 236.9
Cam04g0777 . 3 212 Glutathione S-transferase Gene Family AT3G09270 54.2 1.0e-57 220.3
Cam05g0289 . 2 213 Glutathione S-transferase Gene Family AT3G09270 50.9 1.7e-57 219.5
Cam05g2631 . 1 109 Glutathione S-transferase Gene Family AT1G74590 60.6 3.5e-37 152.1
Cam07g1084 . 1 216 Glutathione S-transferase Gene Family AT1G78380 70.4 1.2e-87 319.7
Cam07g1082 . 1 214 Glutathione S-transferase Gene Family AT1G78380 70.6 2.0e-87 318.9
Cam07g1083 . 1 217 Glutathione S-transferase Gene Family AT1G78380 66.8 1.3e-81 299.7
Cam01g0865 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.4 8.1e-68 253.8
Cam07g1085 . 1 201 Glutathione S-transferase Gene Family AT1G78380 52.2 2.1e-55 212.6
Cam07g1082 . 7 214 Glutathione S-transferase Gene Family AT1G78370 64.9 2.0e-79 292.4
Cam07g1084 . 7 214 Glutathione S-transferase Gene Family AT1G78370 62.0 1.5e-74 276.2
Cam07g1083 . 7 216 Glutathione S-transferase Gene Family AT1G78370 56.7 6.5e-70 260.8
Cam01g0865 . 7 220 Glutathione S-transferase Gene Family AT1G78370 54.7 5.4e-64 241.1
Cam07g1082 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 1.8e-80 295.8
Cam07g1084 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.4 9.2e-80 293.5
Cam07g1083 . 1 217 Glutathione S-transferase Gene Family AT1G78340 59.9 1.5e-74 276.2
Cam01g0865 . 4 218 Glutathione S-transferase Gene Family AT1G78340 54.0 3.5e-63 238.4
Cam07g1085 . 1 199 Glutathione S-transferase Gene Family AT1G78340 50.3 1.1e-53 206.8
Cam07g1082 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.2 1.9e-60 229.2
Cam07g1082 . 1 218 Glutathione S-transferase Gene Family AT1G17180 69.7 2.6e-90 328.6
Cam07g1084 . 1 218 Glutathione S-transferase Gene Family AT1G17180 64.2 4.0e-83 304.7
Cam07g1083 . 1 220 Glutathione S-transferase Gene Family AT1G17180 61.4 2.4e-80 295.4
Cam01g0865 . 4 224 Glutathione S-transferase Gene Family AT1G17180 55.7 1.6e-68 256.1
Cam07g1085 . 1 195 Glutathione S-transferase Gene Family AT1G17180 51.8 8.5e-57 217.2
Cam07g1082 . 2 217 Glutathione S-transferase Gene Family AT1G17190 58.3 6.9e-75 277.3
Cam07g1084 . 2 217 Glutathione S-transferase Gene Family AT1G17190 56.9 1.1e-72 270.0
Cam07g1083 . 2 218 Glutathione S-transferase Gene Family AT1G17190 53.9 9.6e-69 256.9
Cam07g1085 . 1 185 Glutathione S-transferase Gene Family AT1G17190 53.5 6.9e-51 197.6
Cam07g1082 . 3 214 Glutathione S-transferase Gene Family AT3G43800 58.8 1.9e-72 269.2
Cam07g1084 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.9 6.8e-70 260.8
Cam07g1083 . 3 212 Glutathione S-transferase Gene Family AT3G43800 52.1 1.9e-64 242.7
Cam07g1082 . 1 218 Glutathione S-transferase Gene Family AT1G53680 57.8 1.8e-70 262.7
Cam07g1084 . 2 218 Glutathione S-transferase Gene Family AT1G53680 56.6 1.1e-67 253.4
Cam01g0865 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 9.5e-64 240.4
Cam07g1085 . 1 201 Glutathione S-transferase Gene Family AT1G53680 51.5 7.5e-53 204.1
Cam02g0038 . 77 243 Glutathione S-transferase Gene Family AT2G02390 68.3 9.9e-62 233.4
Cam05g0259 . 61 217 Glutathione S-transferase Gene Family AT2G02390 51.0 9.3e-44 173.7
Cam02g0038 . 36 246 Glutathione S-transferase Gene Family AT2G02380 64.9 6.3e-76 280.8
Cam05g0259 . 18 217 Glutathione S-transferase Gene Family AT2G02380 53.5 5.0e-57 218.0
Cam07g0822 . 122 358 Glutathione S-transferase Gene Family AT5G41210 68.4 1.4e-92 336.3
Cam07g0822 . 122 358 Glutathione S-transferase Gene Family AT5G41240 66.7 1.5e-89 327.4
Cam10g2034 . 1 228 Glutathione S-transferase Gene Family AT5G02780 65.7 1.3e-84 309.7
Cam10g2033 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.9 2.5e-83 305.4
Cam02g1428 . 75 294 Glutathione S-transferase Gene Family AT5G02780 64.9 8.4e-79 290.4
Cam02g1428 . 29 292 Glutathione S-transferase Gene Family AT3G55040 60.4 1.3e-84 310.1
Cam10g2033 . 3 234 Glutathione S-transferase Gene Family AT3G55040 58.4 8.8e-78 287.3
Cam10g2034 . 6 226 Glutathione S-transferase Gene Family AT3G55040 60.1 1.3e-76 283.5
Cam10g2034 . 1 228 Glutathione S-transferase Gene Family AT5G02790 67.7 1.1e-89 326.6
Cam10g2033 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 1.8e-89 325.9
Cam02g1428 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.0 8.9e-81 297.0
Cam02g1404 . 1 212 Glutathione S-transferase Gene Family AT1G19570 65.7 1.4e-80 296.2
Cam05g1306 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.4 9.0e-72 266.9
Cam02g1404 . 1 211 Glutathione S-transferase Gene Family AT1G75270 69.8 4.9e-86 314.3
Cam05g1306 . 65 274 Glutathione S-transferase Gene Family AT1G75270 61.6 3.9e-75 278.1
Cam05g1306 . 9 271 Glutathione S-transferase Gene Family AT5G16710 68.3 1.7e-101 365.9
Cam02g1404 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 4.9e-72 268.1
Cam11g1625 . 1 267 Glutathione S-transferase Gene Family AT1G77290 70.0 2.7e-110 395.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000231 3 5 1 2 2 8 4 7 6 9 3 5 6 8 8 6 6 1 5 7 8 4 5 5 7 9 4 6 8 4 162