Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0786 ATGGCGGAGGGTTTTGAAGTTTACCATGTCCCACAACAAAGCAGGAGAGACAAGCTTAGAGTTGGAATTGGAATTGGTACTACTAATTCTACTAATTCTATTAATCATCATAATAATTTCTTCCCTTTATATGATGATCCTTCTTCTTTTATTTCTTCCGATTTTGATTTTCATCAAAATCCCTCTTTTCAACTTTATCATCATCATAATTACCCTCCTACCTCTGCCGTCACCGCCGCCGCCCTCCACCACCACCTCCCTCCGCTCCTCTCCGACCAACAACCACCCTTGTCCCTTGACCTCAACCTCCAACACCGCTACGCCTATCATTCTACTTTACAACTTCAAGCCTCAAAATTCTTCAAGCCAGCTCAGCAGCTCCTCCATGACCTATTTGATTACGCCCCCCATAACTCCTCCGACAAGTTGCTGCCGGATTCCGCCCTTCTTGACACCTTGGAAGGTGATATTCCCCCCGCCGCCGATGATGGACTTGAAACCCACACGACAAAATCTAGGCTTATTACCATGCTCCACGAGGTTTATAGAAGATATAAACTATACTATCAGCAAATGCAAGCAGTGGTTACAACATTTGAGTACGCTGCAGGGCTTGGCAATGCAGCTCCCTATGCAAACTTAGCCGTAAAAGCCATGTTTAAGCACTTCAAATTCTTAAAGAACGCCATAGCCGACCAGCTCCAATTCAACAAGCAGCACCAACCGCCGTCTTACAATCCATATTCTCAAAGATCCATTAACAACCACGGTGCCGGATTCGTCGACCACCAACCCGTTTGGCGCCCGCAGCGAGGCCTCCCTGAGAGTGCTGTCACCGTCCTCCGAGCTTGGCTCTTTGAGCACTTCCTCCATCCTTATCCTACGGATACAGATAAGCTCATGTTGGCCAACCAGACGGGACTCTCGAGAAGTCAGGTATCAAACTGGTTCATCAATGCAAGAGTGAGACTATGGAAACCGATGGTTGAAGAAATCCACATGTTAGAAACAAGGCAAGCTCAAAAATCTCAGCAAAAGGAAGCCAACAATAATAATGCCTCAAACAACAACAACAACGACCATCTTTCATCCACAAACGAATCCTTATTGAAACCCGACGGCCACAACAACAACAATGCATCTTCTTCAAACCACGACCACCACCCTCTAGATTTGTCCAACACCCATTTCTTTCCAACCCACCACCCTCACGCCGCTGCCGGAGCCACCGCTATTGGCGGCAGTGGCAACGTTTCCTTGACGCTCGGCCTCCACCAAAACCATGGTGGGATCACTCTCACGGAGCCATTTCCCATCAATGCTGCTCAGCATTTTAACCTTGGGTTAGAAGCCAACGGTGAAGGATTTGTAAATGAGTGGTTTTGA 1386 47.33 MAEGFEVYHVPQQSRRDKLRVGIGIGTTNSTNSINHHNNFFPLYDDPSSFISSDFDFHQNPSFQLYHHHNYPPTSAVTAAALHHHLPPLLSDQQPPLSLDLNLQHRYAYHSTLQLQASKFFKPAQQLLHDLFDYAPHNSSDKLLPDSALLDTLEGDIPPAADDGLETHTTKSRLITMLHEVYRRYKLYYQQMQAVVTTFEYAAGLGNAAPYANLAVKAMFKHFKFLKNAIADQLQFNKQHQPPSYNPYSQRSINNHGAGFVDHQPVWRPQRGLPESAVTVLRAWLFEHFLHPYPTDTDKLMLANQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKSQQKEANNNNASNNNNNDHLSSTNESLLKPDGHNNNNASSSNHDHHPLDLSNTHFFPTHHPHAAAGATAIGGSGNVSLTLGLHQNHGGITLTEPFPINAAQHFNLGLEANGEGFVNEWF 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22206324 22210733 + CaPI482276_04g007860.1 Cam04g0786 124864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0786 461 FunFam BEL1-like homeodomain protein 9 270 332 - -
Cam04g0786 461 SUPERFAMILY Homeodomain-like 269 334 IPR009057 -
Cam04g0786 461 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 370 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam04g0786 461 ProSiteProfiles 'Homeobox' domain profile. 264 327 IPR001356 GO:0003677(InterPro)
Cam04g0786 461 Pfam Associated with HOX 115 231 IPR006563 -
Cam04g0786 461 CDD homeodomain 267 328 IPR001356 GO:0003677(InterPro)
Cam04g0786 461 MobiDBLite consensus disorder prediction 338 410 - -
Cam04g0786 461 SMART prehox3 109 232 IPR006563 -
Cam04g0786 461 Gene3D - 270 332 - -
Cam04g0786 461 MobiDBLite consensus disorder prediction 338 388 - -
Cam04g0786 461 Pfam Homeobox KN domain 284 323 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam04g0786 461 SMART HOX_1 267 331 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0786 Cam-Chr4:22206324 Cam10g1793 Cam-Chr10:32060581 1.10E-47 dispersed
Cam10g2115 Cam-Chr10:34766345 Cam04g0786 Cam-Chr4:22206324 4.00E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51761 PF07526 POX 2.10E-28 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0786 - - - 0.0