Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0806 ATGGCCCCAATGGAGAGCATCTGCAAGAGCTCCATTCATGACCCACTCAACTGGGGTGTAGCTGCTGAGTCCCTCAAGGGAAGCCATCTTGATGAGGTGAAGCGCATGGTGGAAGAGTATCGAAGGCCCCTTGTCAAGCTTGGAGGTGAAACCCTCACCATTTCGCAAGTAGTTGCCATTGCTACTCGAGATTCTGATGTTGTTGTTGAGCTTTCTGAGTCTGCTAGAGCAGGTGTTAAAGCTAGTAGTGATTGGGTTATGGATAGCATGAACAAAGGCACTGATAGTTATGGAGTTACTACTGGTTTTGGTGCTACGTCTCATAGGAGGACAAAACAAGGTGGGGCTCTTCAAAAGGAGCTTATTCGATTCTTGAATGCTGGGATCTTTGGAAATGGGACTGAGTCTAGCCATACTTTGCCTCATTCAGCTACAAGAGCGGCCATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATCACCAAACTCTTGAACAATAACATCACCCCGTGTTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGACCGAATTCTAAAGCTGTTGGTCCAAATGGTGAAAGTCTTGATGCAAAGGAGGCTTTCCAACAAGCTGGCATTCCATCGGGGTTTTTCGAATTGCAACCGAAGGAAGGGTTGGCTCTTGTTAATGGCACTGCCGTTGGTTCTGGATTGGCTTCTATTGTTCTTTTTGAGGCAAATATTTTGGCTGTCTTATCTGAGATTTTGTCTGCCATTTTTGCTGAAGTTATGCAAGGAAAGCCTGAATTTACAGACCATTTGACCCACAAGTTGAAACATCATCCTGGCCAGATTGAAGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACAGCCAAGAAGTTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCCCTTAGAACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGGTTCTCAACAAAGTCTATTGAACGAGAGATTAATTCAGTTAATGATAATCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTCTGGCTATTGCTTCAATTGGAAAGCTCATGTTTGCTCAATTTTCTGAACTTGTCAATGATTTCTACAACAATGGTTTACCTTCTAACCTTTCTGCAAGTAGAAATCCGAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCTATGGCTTCATACTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACAAGTCATGTTCAAAGTGCAGAACAACACAACCAAGATGTTAACTCTCTTGGTTTGATTTCTTCAAGAAAAACAGCCGAAGCCATTGATATTCTGAAACTCATGTCTTCCACCTTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAATATTGTTAAAACCATTGTAAGCCAAGTGGCGAAAAAAGTTTTGACCACATCCTCTAGTGGTGCACTCCACCCATCTAGATTTTGTGAGAAAGACTTATTGAAGGTTGTTGACAGAGAGTATACTTTTGCATATATAGACGATCCGTGCAGTGCCACGTATCCACTAATGCAGAAGTTGAGGCAAGTTCTTGTTGAGCACGCACTTGCAAATGGTGATGACGAAAAGAATGCAAGTACTTCAATCTTCCAAAAGATTGCTACTTTTGAGGAGGAACTAAAGGTAGTTTTACCAAAAGCAATTGAAAATACAAGGTTGGCATACGAGAGTGGGAAAGCACCTATTAAGAATCAAATTGAAGAATGCAGATCTTATCCATTGTACAGATTTGTAAGGAAAGAGTTAGGAACAAATCTGTTAACAGGTGAAAAAGTGATATCTCCGGGGGAAGAATGTGAAAAGGTATTCACAGCTTTGTGTCAAGGAAAGATGATTGATTCTATCTTAGAATGTTTGAATGAGTGGAATGGAGCTCCAATTCCCATATGTTAG 2118 41.93 MAPMESICKSSIHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVVAIATRDSDVVVELSESARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNIVKTIVSQVAKKVLTTSSSGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALANGDDEKNASTSIFQKIATFEEELKVVLPKAIENTRLAYESGKAPIKNQIEECRSYPLYRFVRKELGTNLLTGEKVISPGEECEKVFTALCQGKMIDSILECLNEWNGAPIPIC 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22362171 22364288 + CaPI482276_04g008060.1 Cam04g0806 124884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0806 705 SUPERFAMILY L-aspartase-like 14 705 IPR008948 GO:0003824(InterPro)
Cam04g0806 705 Gene3D - 518 639 IPR023144 -
Cam04g0806 705 CDD PAL-HAL 50 515 IPR001106 -
Cam04g0806 705 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 187 203 IPR022313 GO:0016841(InterPro)
Cam04g0806 705 Gene3D - 6 251 IPR024083 -
Cam04g0806 705 PANTHER HISTIDINE AMMONIA-LYASE 10 705 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cam04g0806 705 Pfam Aromatic amino acid lyase 52 530 IPR001106 -
Cam04g0806 705 FunFam Phenylalanine ammonia-lyase 518 639 - -
Cam04g0806 705 FunFam Phenylalanine ammonia-lyase 6 251 - -
Cam04g0806 705 NCBIfam phenylalanine ammonia-lyase 14 695 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cam04g0806 705 FunFam Phenylalanine ammonia-lyase 252 561 - -
Cam04g0806 705 Gene3D Fumarase/aspartase (Central domain) 252 700 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0806 Cam-Chr4:22362171 Cam04g0809 Cam-Chr4:22376029 0.00E+00 dispersed
Cam04g0805 Cam-Chr4:22357412 Cam04g0806 Cam-Chr4:22362171 0.00E+00 tandem
Cam04g0806 Cam-Chr4:22362171 Cam04g0807 Cam-Chr4:22366293 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0806 K10775 - csv:101218856 1327.0