Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0807 ATGGCACCTGCCCAATTGGAACAATGTGCTCACCATAACGGCTCAATGGAGAGCTTTTGCACAAGCCATGTTGATCCACTCAATTGGGGTGTGGCAGCTGATGCTCTCAAGGGAAGTCATCTGGATGAGGTGAAGAGGATGGTGGAAGAGTATAGACGGCCTGTGGTGAAGCTTGGGGGTGAGACTCTTACTATTTCTCAAGTGGCTGCTATTGCCACTCGTGATAATGATGTGATTGTGGAATTGGCTGAGTCTGCTAGAGCTAGTGTTAAAGCTAGTAGTGATTGGGTGATGGAGAGTATGAGTAAAGGGACTGATAGTTATGGTGTTACTACCGGATTTGGTGCTACGTCTCATAGAAGAACCAAACAAGGTGGGGCTCTTCAGAAGGAGTTGATTCGGTTTTTGAATGCTGGAATTTTTGGAAATGGGGCTGAGTCGAATCATACTTTGCCTCATTCGGCGACGAGGGCAGCCATGTTGGTGAGGATCAATACTCTGCTTCAAGGCTATTCGGGTATTAGATTTGAGATTTTGGAAGCTATTGCTAATCTTCTCAATCAAAACATTACTCCATGTTTGCCACTGCGGGGAACAATTACGGCATCTGGGGATCTTGTCCCTTTGTCGTATATTGCTGGGCTACTTACCGGTCGTCATAATTCCAAGGCCATTGGGCCTAATGGGGAAACTCTTGACGCAGAGACTGCCTTTAAAAAAGCTGGCATTCCTTCTGGCTTCTTCGAGTTGCAACCCAAAGAAGGCCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGGTTGGCTTCTATTGTCCTATTTGAGACAAATATATTAGCTGTTTTGTCAGAAATTCTTTCTGCTATTTTTGCTGAGGTCATGCAAGGAAAGCCCGAATTCACCGATCATTTGACTCACAAATTGAAACATCATCCTGGTCAGATTGAAGCAGCTGCAATCATGGAGCACATTTTGGATGGAAGTTCTTACATGAAAACAGCCAAGAAACTACATGAAATTGACCCCCTCCAAAAGCCCAAACAAGATCGTTATGCCCTTAGAACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGGTTCTCAACAAAGTCTATTGAACGAGAGATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCATTGCATGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCCATGGACAACACGCGGTTGGCCATTGCTTCAATTGGGAAGCTCATGTTTGCCCAATTCTCTGAACTTGTCAACGATTTTTACAACAACGGCTTGCCTTCTAACCTTTCTGCAAGTAGAAATCCGAGCTTGGATTATGGGTTTAAAGGATCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATACCTTGCAAATCCGGTGACAAGTCATGTCCAAAGTGCTGAACAACATAACCAAGATGTTAATTCTCTTGGTTTAATTTCTTCGAGAAAAACAGCTGAAGCCATTGATATCTTGAAACTCATGTCGTCAACATTTTTAGTTGCACTCTGCCAAGCAATTGACTTGAGGCACTTGGAGGAAAACTTGAAGAGCACAGTTAAAAGCATAGTGAGCCAAGTAGCCAAGAAGATGTTGACGACATCCTCCAATGGTGCACTACACCCATCAAGATTTTGTGAGAAAGATCTACTTAAAGTCGTTGATAGAGAATACACATTTGCATACATTGATGATCCATGCAGCGCTACTTATCCGTTGATGCAAAAATTGAGACAAGTACTAGTTGAACATGCACTCACCAATGGCGAAAATGAAAAGGACATGAACACTTCCATCTTCCAGAAGATTACTGCTTTTGAAGAGGAATTAAAAGCAATTTTACCAAAGGAAATTGAAAACGCAAGGTTGGCATATGAGAGTGGAAATTCTAAAATTGCAAATCAAATTAGGAATTGCAGATCCTATCCATTATATAGATTTGTGAGAGAAGACTTGGGAACAAAACTTTTGACTGGAGAAAGGGTTATATCTCCCGGAGAAGAATGCGAGAAGGTATTTACAGCTTTGTGTCAAGGAAAGATGATTGACTCTATCTTAGAGTGCTTAAAAGAGTGGAATGGTGCTCCCATTCCTATCCGTTGA 2151 42.35 MAPAQLEQCAHHNGSMESFCTSHVDPLNWGVAADALKGSHLDEVKRMVEEYRRPVVKLGGETLTISQVAAIATRDNDVIVELAESARASVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNQNITPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGETLDAETAFKKAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFETNILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGSEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSIVSQVAKKMLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALTNGENEKDMNTSIFQKITAFEEELKAILPKEIENARLAYESGNSKIANQIRNCRSYPLYRFVREDLGTKLLTGERVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIR 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22366293 22368443 + CaPI482276_04g008070.1 Cam04g0807 124885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0807 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841(InterPro)
Cam04g0807 716 NCBIfam phenylalanine ammonia-lyase 25 706 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cam04g0807 716 FunFam Phenylalanine ammonia-lyase 263 572 - -
Cam04g0807 716 CDD PAL-HAL 61 526 IPR001106 -
Cam04g0807 716 SUPERFAMILY L-aspartase-like 25 715 IPR008948 GO:0003824(InterPro)
Cam04g0807 716 Gene3D - 529 650 IPR023144 -
Cam04g0807 716 Pfam Aromatic amino acid lyase 63 542 IPR001106 -
Cam04g0807 716 Gene3D Fumarase/aspartase (Central domain) 263 711 - -
Cam04g0807 716 FunFam Phenylalanine ammonia-lyase 16 262 - -
Cam04g0807 716 FunFam Phenylalanine ammonia-lyase 529 650 - -
Cam04g0807 716 Gene3D - 17 262 IPR024083 -
Cam04g0807 716 PANTHER HISTIDINE AMMONIA-LYASE 22 715 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1546 Cam-Chr3:30402102 Cam04g0807 Cam-Chr4:22366293 4.50E-237 dispersed
Cam04g0807 Cam-Chr4:22366293 Cam07g1372 Cam-Chr7:28107830 0.00E+00 dispersed
Cam04g0806 Cam-Chr4:22362171 Cam04g0807 Cam-Chr4:22366293 0.00E+00 tandem
Cam04g0807 Cam-Chr4:22366293 Cam04g0808 Cam-Chr4:22371298 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0807 K10775 - csv:101222092 1349.34