Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0808 ATGGCACCAACTCAATTCCAGCAACAGAATGGTTCAATGGAGAGCTTGTGCACTAGCCAAAACGATCCACTCAACTGGGGTGTGGCCGCCGAGTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTTGAGGAGTACCGGAGGCCCCTAGTCAAGCTTGGTGGTGAAACTCTCACTATTTCCCAAGTAGCTGCTATTGCTACTCGGGACTCTGATGTTACGGTTGAACTTTCTGAGTCTGCTAGAGCTGGTGTTAACGCTAGTAGTGATTGGGTTATGGAGAGTATGAACAAAGGGACTGATAGTTATGGTGTTACTACTGGGTTTGGTGCTACGTCTCATAGAAGGACCAAACAAGGAGGTGCTCTTCAGAAGGAGTTGATTAGATTTTTGAACGCTGGGATTTTTGGAAATGGAGCTGAGTCTGATCATACTTTGCCCCACTCAGCGACAAGGGCGGCCATGTTGGTGAGAATCAATACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAAATTTTGGAAGCTATAACCAAACTTTTGAACCATAACATTACTCCATGCTTGCCTCTTCGTGGAACAATTACTGCTTCTGGAGATCTTGTTCCACTTTCTTATATTGCTGGATTGCTCACTGGACGACCTAACTCCAAGGCGATTGGACCCAACGGAGAACATATTGACGCCAAGGAGGCTTTCCAACAAGCTGGTATTCCTTCTGGGTTCTTTGAATTGCAACCTAAGGAAGGCCTTGCTCTTGTTAATGGTACTGCTGTCGGATCAGGATTGGCTTCTATTGTCCTCTTTGAGGCAAATATTTTGGTTGTTCTGGCAGAAATTCTTTCTGCTATTTTTTCTGAGGTCATGCAAGGAAAGCCAGAATTTACTGATCATTTGACTCATAAGTTGAAGCACCATCCTGGTCAAATTGAAGCAGCTGCAATTATGGAGCACATTTTGGATGGAAGCTCTTACATGAAAGCAGCCAAGAAATTGCATGAAATTGATCCCCTCCAAAAGCCTAAACAAGATCGCTATGCTCTAAGAACTTCACCTCAATGGCTTGGTCCCTTGATTGAAGTGATTCGATTCTCTACAAAATCTATTGAGCGAGAGATTAACTCCGTCAATGACAACCCTTTGATTGACGTTTCAAGAAACAAAGCACTACATGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCCATGGACAACACTCGATTGGCCATTGCTTCTATTGGGAAGCTCATGTTTGCCCAATTCTCAGAACTTGTTAATGATTTCTACAACAACGGTTTGCCATCTAATCTTTCTGCAAGTAGAAATCCGAGTTTGGATTATGGGTTTAAAGGAGCTGAAATTGCCATGGCTTCATACTGTTCTGAGCTTCAATACCTTGCAAATCCAGTGACAAGCCATGTTCAAAGCGCCGAGCAACACAACCAAGATGTTAACTCTCTAGGTTTAATTTCTTCAAGGAAAACAGCTGAAGCCATTGATATTCTGAAACTCATGTCATCTACATTTTTGGTTGCTCTCTGCCAAGCAATTGACTTAAGGCATTTGGAGGAAAACTTGAAGAGCACTGTGAAAAGCACTGTTAGCCAAATAGCCAAGAAAGTATTGACCACATCCTCTAATGGCACACTTCACCCCTCAAGATTTTGTGAGAAAGATCTACTCAAAGTCATTGATAGAGAGTACACATTTGCTTATATCGACGATCCATGTAGTGCTACTTACCCATTAAGCCAAAAGTTGAGGCAAGTTCTTGTTGAGCATGCACTTGCAAACGGTGATGATGAAAAGAACCCAAACACTTCAATCTTCCAAAAGATTGTTTCTTTCGAGGAGGAACTAAAGGCAATATTACCCAAGGAAGTTGAAAATGCAAGGTTGGCCTATGAGAGTGGAGATTCTAAAATTGAAAATCAGATCAAGGATTGTAGATCATATCCGTTGTATAGATTTGTAAGAGAAGAGTTGGAAACAAAAATGCTAACAGGAGAAAGAGTGATATCTCCGGGAGAAGAGTGTGAGAAAGTATTCACAGCTTTGTGTCAAGGCAAGATGATAGACTCGATCTTAGAGTGCTTGAAGGAGTGGAATGGTGCTCCAATTCCTATTTGCTAA 2142 42.44 MAPTQFQQQNGSMESLCTSQNDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVNASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGEHIDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILVVLAEILSAIFSEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVSQIAKKVLTTSSNGTLHPSRFCEKDLLKVIDREYTFAYIDDPCSATYPLSQKLRQVLVEHALANGDDEKNPNTSIFQKIVSFEEELKAILPKEVENARLAYESGDSKIENQIKDCRSYPLYRFVREELETKMLTGERVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIC 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22371298 22373439 + CaPI482276_04g008080.1 Cam04g0808 124886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0808 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Cam04g0808 713 CDD PAL-HAL 58 523 IPR001106 -
Cam04g0808 713 PANTHER HISTIDINE AMMONIA-LYASE 18 713 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cam04g0808 713 Pfam Aromatic amino acid lyase 60 536 IPR001106 -
Cam04g0808 713 Gene3D - 14 259 IPR024083 -
Cam04g0808 713 Gene3D - 526 647 IPR023144 -
Cam04g0808 713 FunFam Phenylalanine ammonia-lyase 13 259 - -
Cam04g0808 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841(InterPro)
Cam04g0808 713 NCBIfam phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cam04g0808 713 SUPERFAMILY L-aspartase-like 22 713 IPR008948 GO:0003824(InterPro)
Cam04g0808 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Cam04g0808 713 FunFam Phenylalanine ammonia-lyase 260 561 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0805 Cam-Chr4:22357412 Cam04g0808 Cam-Chr4:22371298 0.00E+00 dispersed
Cam04g0808 Cam-Chr4:22371298 Cam07g1372 Cam-Chr7:28107830 0.00E+00 dispersed
Cam04g0807 Cam-Chr4:22366293 Cam04g0808 Cam-Chr4:22371298 0.00E+00 tandem
Cam04g0808 Cam-Chr4:22371298 Cam04g0809 Cam-Chr4:22376029 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0808 K10775 - csv:101218617 1342.02