Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0816 ATGATTACGTTTATGGATTCGAAAGAGAAATTGAAAGAGGTGGAGAAATGTTTAGATCCTCAGTTATGGCATGCTTGTGCTGGAGGAATGGTTCAAATGCCGCCGGTGAACGCCAGGGTTTTCTATTTTCCACAAGGCCATGCGGAGCATTCTTGTGCTCCAGTTGATTTCAGGAACTGTCCTAAGGTTCCTTCATATACCCTATGCAGAGTTTCTGCCATCAAGTTCCTTGCAGATCCTGACACTGATGAAGTGTTTGCTAAACTTAGGTTGATTCCCATAAATGGAAATGAACTAGATTTTGAAGATGATGGAATTGGGAGGCTTAATGGGTCTGAACAAGATAAGCCAACTTCATTTGCAAAGACACTGACTCAATCTGATGCTAACAATGGTGGGGGTTTCTCTGTTCCAAGGTATTGTGCAGAAACCATCTTCCCTCGGTTGGATTATTCTGCTGATCCACCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGCGAGACATGGAAATTCAGGCACATTTACCGAGGGACGCCTCGCCGGCATCTTTTGACTACTGGCTGGAGTACTTTTGTTAATCATAAGAAGCTCGTTGCTGGTGATTCCATTGTTTTTTTGAGGGCAGAAAATGGAGATCTCTGCGTCGGGATTAGACGGGCGAAAAGGGGAATCGGGGATGGACCGGAGTCGTCATGTGGATGGAATCCAGCAGGTGGCAACTGTGCTGTCCCATATGGAGCGTTCTCCTCATTTTTGAGGGAAGATGACAACAGATTAACGAGGTCTGCTAATGGCATGAATGGAAATGGAAGTCTTATGGGAAAGGGGAAAGTGAAGCCTGAATCAGTTATTGAAGCTGCTACACTTGCTGCAAATGGACAACCCTTTGAAATAGTATTCTATCCAAGAGCTAGTACTCCTGAATTCTGCGTCAAGGCAGCACTGGTTAAAGCAGCATTGCAGATCCGGTGGTGCTCAGGTATGAGGTTCAAGATGGCCTTTGAAACCGAGGACTCTTCACGAATTAGCTGGTTCATGGGTACCATCAATTCGGTTCAGGTTTCTGACCCACTGCGCTGGCCTGAGTCACCATGGAGGCTTCTTCAGGTTACATGGGATGAACCAGATTTACTTCAGAATGTGAAACGCGTTAGCCCATGGTTGGTTGAATTGGTATCAAACATGTCTCCAATTCACCTAGCCCCCTTCTCACCACCGAGGAAAAAGCTCAGATATCCACAACACCCTGATTTCCCTCTCGATAACCAACCTCCTGTGCCATCGTTCTCTAGTTATCTCCATGGGACTGGCAGCCCCTTCGGTTGTCCTCCCGACAACAACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCAGATTTTCATCTCAGTAAACTGCAGTCAGGTCTGTTTTCGATTGGTTATCGATCACTGGATCCAGCTGCTGGATCAACTAGACTTTCTGGTAATGCAATGACTGAAAAACCAAGTATGAGTGAAAACGTATCTTGCTTGCTAACCATGGCACATTCTACTCAAGCTTCAAAGAAATTTGACGGCGTAAAGACTCCTCAGCTAATACTTTTTGGCCGACCCATACTTACAGAATTGCAGATGTCCCAAAGCTTCTCCGGCGATACGGTTTCTCCAGTTAATACTGGAAATAGTTCATCAGATGGAAATGGAGACAAAACGGCAAATTTCTCCGATGGCTCTGGATCTGCTTTACATCAACAAGGTCTACCAGAAGGCTCGGCTTGCGAAAATTTCCAATGGTACAAGGACAATCGCCAAGAAATTGAGCCTATCTTGGATACCGGCCACTGTAAAGTCTTTATGGAATCAGAAGATGTAGGTCGCACCCTCGATCTTTCTTCACTTGGGTCTTATGAAGAATTGTACAGAAAACTTGGAAATATGTTTGGTATAGATAATTCAGAGACATTGAATCATGTCTTGTACCGTGATGTTTCCGGTGCTGTCAAGCATGTCGGTGACGAACAATTCAGTGACTTCATCAAGACAGCCAGAAGATTGACAATTCTAACAGATTCAGGAAGTAACAATGTAGGAGCTTAG 2097 45.16 MITFMDSKEKLKEVEKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHSCAPVDFRNCPKVPSYTLCRVSAIKFLADPDTDEVFAKLRLIPINGNELDFEDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGPESSCGWNPAGGNCAVPYGAFSSFLREDDNRLTRSANGMNGNGSLMGKGKVKPESVIEAATLAANGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTINSVQVSDPLRWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMSPIHLAPFSPPRKKLRYPQHPDFPLDNQPPVPSFSSYLHGTGSPFGCPPDNNPAGMQGARHAHFGLSLSDFHLSKLQSGLFSIGYRSLDPAAGSTRLSGNAMTEKPSMSENVSCLLTMAHSTQASKKFDGVKTPQLILFGRPILTELQMSQSFSGDTVSPVNTGNSSSDGNGDKTANFSDGSGSALHQQGLPEGSACENFQWYKDNRQEIEPILDTGHCKVFMESEDVGRTLDLSSLGSYEELYRKLGNMFGIDNSETLNHVLYRDVSGAVKHVGDEQFSDFIKTARRLTILTDSGSNNVGA 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22439109 22441528 - CaPI482276_04g008160.1 Cam04g0816 124894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0816 698 MobiDBLite consensus disorder prediction 550 586 - -
Cam04g0816 698 Pfam Auxin response factor 287 370 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam04g0816 698 Gene3D - 118 222 IPR015300 -
Cam04g0816 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 694 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam04g0816 698 Gene3D - 324 398 - -
Cam04g0816 698 SUPERFAMILY DNA-binding pseudobarrel domain 114 226 IPR015300 -
Cam04g0816 698 FunFam Auxin response factor 118 222 - -
Cam04g0816 698 FunFam Auxin response factor 325 398 - -
Cam04g0816 698 MobiDBLite consensus disorder prediction 550 585 - -
Cam04g0816 698 CDD B3_DNA 119 220 IPR003340 GO:0003677(InterPro)
Cam04g0816 698 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677(InterPro)
Cam04g0816 698 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677(InterPro)
Cam04g0816 698 Gene3D - 611 696 - -
Cam04g0816 698 ProSiteProfiles PB1 domain profile. 612 692 IPR053793 -
Cam04g0816 698 SMART B3_2 120 222 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0816 Cam-Chr4:22439109 Cam11g0143 Cam-Chr11:3109179 1.40E-76 dispersed
Cam02g2191 Cam-Chr2:34648263 Cam04g0816 Cam-Chr4:22439109 7.10E-265 transposed
Cam08g1540 Cam-Chr8:21634746 Cam04g0816 Cam-Chr4:22439109 1.50E-94 transposed
Cam04g0816 Cam-Chr4:22439109 Cam08g1201 Cam-Chr8:18321638 5.90E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51763 PF02362 B3 1.50E-21 CL0405 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0816 K14486 - csv:101217039 1394.02