Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0824 ATGTCTAACAATGTCAAAGACTACCAAGACCCACCGCCGGCCCCCTTCATCGACGCCGGCGAGTTCATTCAATGGTCGTTTTACAGAGCCATTATCGCCGAGTTCGTCGCCACCCTTCTCTTCTTGTACATTCTTGTTCTCACTGTCATTGGCAATGCCAGCCTCTCCGCCGCCAATATCTGCGGCGGCGTCGGACTTTTGGGCATTTCCTGGGCTGTCGGCGGCATGATCTTCGTCCTCGTTTACTGCACCGCTGGAATTTCTGGTGGGCATATTAATCCGGCGGTGACGTTCGGGATGTTGTTAGCTCGAAAAATCTCTCTAATCAGAGCCTTTTCTTACATTGTGGCTCAATGTTTGGGAGCCATTTGTGGGTGTGCATTGGCTAAATCATTACAGAAGACTTATTACGTTCAATTCCAAGGTGCAGCCAATATAGTCGCCGATGGGTACAGCATCGGCACCGGCTTAGCCGCGGAGATCATCGGAACTTTTGTTCTTGTTTACACTGTCTTTTCCGCCACTGATCCCAAGAGAAACGCTAGAGATTCTCACATTCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGATTATGGTTCATTTAGCCACCATTCCCATCACCGGCACCGGCATCAACCCGGCTCGAAGCTTCGGCGCTGCAGTGATCTATAACAAAGCCAAGGCCTGGGATCATCATTGGATCTTTTGGGTTGGACCATTCATTGGAGCTGCCATTGCTGCAACTTATCATGTAGTTATAATAAGGGCAGGGACAATTAAAGCTCTTGTTTCCTTCAGAAGTTCCTCTGCTCTATAA 822 49.51 MSNNVKDYQDPPPAPFIDAGEFIQWSFYRAIIAEFVATLLFLYILVLTVIGNASLSAANICGGVGLLGISWAVGGMIFVLVYCTAGISGGHINPAVTFGMLLARKISLIRAFSYIVAQCLGAICGCALAKSLQKTYYVQFQGAANIVADGYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVIMVHLATIPITGTGINPARSFGAAVIYNKAKAWDHHWIFWVGPFIGAAIAATYHVVIIRAGTIKALVSFRSSSAL 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22508411 22509600 - CaPI482276_04g008240.1 Cam04g0824 124902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0824 273 CDD MIP 29 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0824 273 Gene3D Glycerol uptake facilitator protein. 14 273 IPR023271 -
Cam04g0824 273 NCBIfam MIP family channel protein 33 251 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0824 273 ProSitePatterns MIP family signature. 91 99 IPR022357 -
Cam04g0824 273 PRINTS Major intrinsic protein family signature 110 129 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0824 273 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0824 273 PRINTS Major intrinsic protein family signature 73 97 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0824 273 PRINTS Major intrinsic protein family signature 235 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0824 273 PRINTS Major intrinsic protein family signature 29 48 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0824 273 PRINTS Major intrinsic protein family signature 195 217 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0824 273 Pfam Major intrinsic protein 23 252 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0824 273 SUPERFAMILY Aquaporin-like 21 257 IPR023271 -
Cam04g0824 273 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 269 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cam04g0824 273 FunFam Probable aquaporin PIP1-2 14 271 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0824 Cam-Chr4:22508411 Cam04g0826 Cam-Chr4:22529881 1.30E-120 dispersed
Cam04g0824 Cam-Chr4:22508411 Cam04g0825 Cam-Chr4:22513641 1.90E-122 tandem
Cam10g1998 Cam-Chr10:33871730 Cam04g0824 Cam-Chr4:22508411 2.90E-113 wgd
Cam04g0824 Cam-Chr4:22508411 Cam08g1194 Cam-Chr8:18281454 3.90E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0824 K09872 - csv:101215604 503.442