Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0825 ATGTCGAAGGATATTGAAGCTGGAGGGCGTGGTGGGTTTAGTGGGAAGGATTACGAAGATCCGCCGCCGGCCCCATTGATCGACGCTCAGGAGTTTGCCCAGTGGTCATTTTATAGAGCCATTATAGCAGAGTTTGTTGCTACTCTTTTGTTCTTGTATGTTACTGTTCTTACTGTCATTGGGTATAAAGTTCAGAGTGATGATAAGAATGGAGGCGAGATTTGTGGTGGCGTCGGTATTTTGGGCATTGCTTGGGCCTTTGGTGGCATGATTTTTGTTCTTGTTTACTGCACCGCCGGGATTTCTGGAGGACATATTAATCCAGCGGTGACTTTTGGGTTGTTCTTGGCTCGGAAAGTGTCTTTAATTCGAGCAATCCTTTACATGGTGGCTCAATGTTTAGGCGCCATTTGTGGGTGTGCATTGGTGAAATCATTCCAGAAGGCTCATTACAATGAGTACGGCGGTGGAGCCAATTCTCTCGCCGATGGGTACAGCACGGGCACCGGCTTAGCGGCGGAGATCATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGACCCGAAGAGAAACGCTAGAGATTCTCACGTTCCAGTTTTGGCTCCACTCCCAATTGGATTCGCAGTGTTTATGGTTCATTTGGCTACCATTCCGATCACCGGCACCGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCCGTGATCTTTAACAAAGACAAGCCCTGGGATGATCAGTGGATCTTTTGGGTTGGGCCGTTCATTGGAGCTGCCATTGCTGCAATTTATCATCAAATCGTGTTGAGGGCAGGGGCAGTTAAAGCTCTGGGATCGTTCAGAAGTTCCACTGCCGTATGA 864 49.07 MSKDIEAGGRGGFSGKDYEDPPPAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYKVQSDDKNGGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQCLGAICGCALVKSFQKAHYNEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQIVLRAGAVKALGSFRSSTAV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22513641 22520189 - CaPI482276_04g008250.1 Cam04g0825 124903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0825 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Cam04g0825 287 MobiDBLite consensus disorder prediction 1 21 - -
Cam04g0825 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Cam04g0825 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Cam04g0825 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0825 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0825 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0825 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0825 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0825 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0825 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cam04g0825 287 CDD MIP 39 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0825 287 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0825 287 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0825 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2184 Cam-Chr2:34570844 Cam04g0825 Cam-Chr4:22513641 5.80E-135 dispersed
Cam04g0519 Cam-Chr4:18586301 Cam04g0825 Cam-Chr4:22513641 6.40E-12 dispersed
Cam04g0825 Cam-Chr4:22513641 Cam05g2298 Cam-Chr5:31095131 4.20E-133 dispersed
Cam04g0824 Cam-Chr4:22508411 Cam04g0825 Cam-Chr4:22513641 1.90E-122 tandem
Cam04g0825 Cam-Chr4:22513641 Cam04g0826 Cam-Chr4:22529881 6.20E-145 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0825 K09872 - csv:101215366 526.168