Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam04g0835 | ATGATGTCTGGTATTGAATTTTCTGTTTCTTCTAATTCTAATGGAGAATTTGCTGATCATCAACAACAAAATTCTCAACTTTATCATCATCTTCCTCATAACCCTAACCCTAACCCTAACCCTAATCCAAATCTTGATTCTTCTTTTCCTCCTCCAACTCTCCCCAAGAAGAAGAGAAACTTGCCAGGAAAACCAGATCCAGATGCTGAGGTAATTGCTTTATCTCCCAACACTTTAATGGCTACAAACAGATTCATATGTGAAATATGCAATAAAGGGTTTCAAAGGGACCAAAATTTGCAACTTCATAGAAGAGGGCATAATTTGCCATGGAAGCTAAGGCAAAGAAGCAATAAAGAAGTAGTGAAGAAGAAAGTATATATTTGCCCTGAAAAATGTTGTGTTCATCATGATCCAAGCAGAGCCCTTGGGGACCTAACTGGAATTAAAAAACATTTCAGTAGAAAACATGGGGAGAAAAAATGGAAGTGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAGACTTGTGGTACTAGAGAGTACAAATGTGACTGTGGAACACTATTTTCCAGGAAAGACAGCTTCATAACTCACAGGGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAAGCTAATATCATCTGTTACAGCAGCAAATTCAAGACTTAATTTCATTGCCAATAATAATAATGATTCAATCAACCAATCTCTTTTCAATTCCCAATTACAAGACCATAATTTTGAATCATCACCTGCTTTCCCCCAATTTCTTCCACCCTATAATAATCTCTACCAAATCTCAAATCAAATTTTGAGTTTGAATAACAAAAACAATGCTTCAGAAACAGCCACCATGAACCTCACTCTGTCCTCCTCTGCCAACAAACAACAACAAGCTTATAACTTGCCATCGTTTTGCTCCGGTGGCGGTGGCGGAGGGATGTCGGCGACGGCACTGCTGCTGAAAGCGGCGCAATTGGGGTCGACAAAGAGTAAAGATAACTCATTTTCTTCAGGGAGTAACAGTGTGGGAGTAGTTATGAGTTCATCTCCAAATAATATTTCATTTGAGAGTGGTAATTGTAATTATTATGGGGGAAAGGGAGATGGGTTGAGGGATTTTTTTGGGAGGAAGGAGGGAGAAGGGAATGATCATCAGTTGATTATTCCATTAATGGAGATGACCAAATTTGCTAACTCTATGAGCTCCGAGATGGGTTTGAGCCAATTCATTGGCAATAATAATCCGGGATAA | 1281 | 38.72 | MMSGIEFSVSSNSNGEFADHQQQNSQLYHHLPHNPNPNPNPNPNLDSSFPPPTLPKKKRNLPGKPDPDAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVKKKVYICPEKCCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESAKLISSVTAANSRLNFIANNNNDSINQSLFNSQLQDHNFESSPAFPQFLPPYNNLYQISNQILSLNNKNNASETATMNLTLSSSANKQQQAYNLPSFCSGGGGGGMSATALLLKAAQLGSTKSKDNSFSSGSNSVGVVMSSSPNNISFESGNCNYYGGKGDGLRDFFGRKEGEGNDHQLIIPLMEMTKFANSMSSEMGLSQFIGNNNPG | 426 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 22587034 | 22590526 | - | CaPI482276_04g008350.1 | Cam04g0835 | 124913 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam04g0835 | 426 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 140 | 219 | - | - | |
Cam04g0835 | 426 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cam04g0835 | 426 | FunFam | protein indeterminate-domain 12-like | 64 | 133 | - | - | |
Cam04g0835 | 426 | MobiDBLite | consensus disorder prediction | 1 | 70 | - | - | |
Cam04g0835 | 426 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 85 | 107 | IPR013087 | - | |
Cam04g0835 | 426 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 123 | 157 | - | - | |
Cam04g0835 | 426 | Gene3D | Classic Zinc Finger | 65 | 138 | - | - | |
Cam04g0835 | 426 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 36 | 350 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cam04g0835 | 426 | MobiDBLite | consensus disorder prediction | 34 | 58 | - | - | |
Cam04g0835 | 426 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 161 | 185 | - | - | |
Cam04g0835 | 426 | SUPERFAMILY | beta-beta-alpha zinc fingers | 84 | 182 | IPR036236 | - | |
Cam04g0835 | 426 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 87 | 107 | IPR013087 | - | |
Cam04g0835 | 426 | Gene3D | Classic Zinc Finger | 141 | 219 | - | - | |
Cam04g0835 | 426 | SMART | c2h2final6 | 85 | 107 | IPR013087 | - | |
Cam04g0835 | 426 | SMART | c2h2final6 | 162 | 182 | IPR013087 | - | |
Cam04g0835 | 426 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 188 | 226 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam04g0835 | Cam-Chr4:22587034 | Cam09g0065 | Cam-Chr9:1533192 | 3.00E-87 | dispersed | |
Cam02g0249 | Cam-Chr2:3368607 | Cam04g0835 | Cam-Chr4:22587034 | 8.40E-85 | transposed | |
Cam02g1069 | Cam-Chr2:17850030 | Cam04g0835 | Cam-Chr4:22587034 | 8.20E-88 | transposed | |
Cam03g1719 | Cam-Chr3:32298812 | Cam04g0835 | Cam-Chr4:22587034 | 4.50E-86 | transposed | |
Cam09g0609 | Cam-Chr9:6022191 | Cam04g0835 | Cam-Chr4:22587034 | 4.40E-82 | transposed | |
Cam10g2003 | Cam-Chr10:33907426 | Cam04g0835 | Cam-Chr4:22587034 | 1.40E-91 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51764 | PF12171 | zf-C2H2_jaz | 6.00E-05 | CL0361 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam04g0835 | K25870 | - | csv:101221389 | 591.652 |