Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0835 ATGATGTCTGGTATTGAATTTTCTGTTTCTTCTAATTCTAATGGAGAATTTGCTGATCATCAACAACAAAATTCTCAACTTTATCATCATCTTCCTCATAACCCTAACCCTAACCCTAACCCTAATCCAAATCTTGATTCTTCTTTTCCTCCTCCAACTCTCCCCAAGAAGAAGAGAAACTTGCCAGGAAAACCAGATCCAGATGCTGAGGTAATTGCTTTATCTCCCAACACTTTAATGGCTACAAACAGATTCATATGTGAAATATGCAATAAAGGGTTTCAAAGGGACCAAAATTTGCAACTTCATAGAAGAGGGCATAATTTGCCATGGAAGCTAAGGCAAAGAAGCAATAAAGAAGTAGTGAAGAAGAAAGTATATATTTGCCCTGAAAAATGTTGTGTTCATCATGATCCAAGCAGAGCCCTTGGGGACCTAACTGGAATTAAAAAACATTTCAGTAGAAAACATGGGGAGAAAAAATGGAAGTGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAGACTTGTGGTACTAGAGAGTACAAATGTGACTGTGGAACACTATTTTCCAGGAAAGACAGCTTCATAACTCACAGGGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAAGCTAATATCATCTGTTACAGCAGCAAATTCAAGACTTAATTTCATTGCCAATAATAATAATGATTCAATCAACCAATCTCTTTTCAATTCCCAATTACAAGACCATAATTTTGAATCATCACCTGCTTTCCCCCAATTTCTTCCACCCTATAATAATCTCTACCAAATCTCAAATCAAATTTTGAGTTTGAATAACAAAAACAATGCTTCAGAAACAGCCACCATGAACCTCACTCTGTCCTCCTCTGCCAACAAACAACAACAAGCTTATAACTTGCCATCGTTTTGCTCCGGTGGCGGTGGCGGAGGGATGTCGGCGACGGCACTGCTGCTGAAAGCGGCGCAATTGGGGTCGACAAAGAGTAAAGATAACTCATTTTCTTCAGGGAGTAACAGTGTGGGAGTAGTTATGAGTTCATCTCCAAATAATATTTCATTTGAGAGTGGTAATTGTAATTATTATGGGGGAAAGGGAGATGGGTTGAGGGATTTTTTTGGGAGGAAGGAGGGAGAAGGGAATGATCATCAGTTGATTATTCCATTAATGGAGATGACCAAATTTGCTAACTCTATGAGCTCCGAGATGGGTTTGAGCCAATTCATTGGCAATAATAATCCGGGATAA 1281 38.72 MMSGIEFSVSSNSNGEFADHQQQNSQLYHHLPHNPNPNPNPNPNLDSSFPPPTLPKKKRNLPGKPDPDAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVKKKVYICPEKCCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESAKLISSVTAANSRLNFIANNNNDSINQSLFNSQLQDHNFESSPAFPQFLPPYNNLYQISNQILSLNNKNNASETATMNLTLSSSANKQQQAYNLPSFCSGGGGGGMSATALLLKAAQLGSTKSKDNSFSSGSNSVGVVMSSSPNNISFESGNCNYYGGKGDGLRDFFGRKEGEGNDHQLIIPLMEMTKFANSMSSEMGLSQFIGNNNPG 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22587034 22590526 - CaPI482276_04g008350.1 Cam04g0835 124913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0835 426 FunFam protein indeterminate-domain 5, chloroplastic-like 140 219 - -
Cam04g0835 426 MobiDBLite consensus disorder prediction 1 33 - -
Cam04g0835 426 FunFam protein indeterminate-domain 12-like 64 133 - -
Cam04g0835 426 MobiDBLite consensus disorder prediction 1 70 - -
Cam04g0835 426 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Cam04g0835 426 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 123 157 - -
Cam04g0835 426 Gene3D Classic Zinc Finger 65 138 - -
Cam04g0835 426 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 350 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam04g0835 426 MobiDBLite consensus disorder prediction 34 58 - -
Cam04g0835 426 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 161 185 - -
Cam04g0835 426 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
Cam04g0835 426 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Cam04g0835 426 Gene3D Classic Zinc Finger 141 219 - -
Cam04g0835 426 SMART c2h2final6 85 107 IPR013087 -
Cam04g0835 426 SMART c2h2final6 162 182 IPR013087 -
Cam04g0835 426 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 188 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0835 Cam-Chr4:22587034 Cam09g0065 Cam-Chr9:1533192 3.00E-87 dispersed
Cam02g0249 Cam-Chr2:3368607 Cam04g0835 Cam-Chr4:22587034 8.40E-85 transposed
Cam02g1069 Cam-Chr2:17850030 Cam04g0835 Cam-Chr4:22587034 8.20E-88 transposed
Cam03g1719 Cam-Chr3:32298812 Cam04g0835 Cam-Chr4:22587034 4.50E-86 transposed
Cam09g0609 Cam-Chr9:6022191 Cam04g0835 Cam-Chr4:22587034 4.40E-82 transposed
Cam10g2003 Cam-Chr10:33907426 Cam04g0835 Cam-Chr4:22587034 1.40E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51764 PF12171 zf-C2H2_jaz 6.00E-05 CL0361 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0835 K25870 - csv:101221389 591.652