Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0845 ATGTTGGACCTCAATCTCTGTATTCTCTCCGGAGATTCCTCTTCCGGTGGAACTGGTTTAAATCCCTTTAATCTTTCCGCTCCCGGAGTTCAGAGTCCCATTTCATCCTCCGTCGTCAACGCCGATCAGTCCAACGTCATTGGCGATCACGGCTCCTCTTCCAACGCTGATTGTGGGTTCACTTTCTCTTTCAGCATCCTCAACAACAGCAACGACGATCAACGCGGCCGGACTGTCGCCGGCAGGTTTTCCTCCGACGTCTATTCACAGAGGAAATGGATGGTTCAACAGTCCGTTCATCCGGCGAAAAAGGGCCGGCGAGGCCCGAAATCAAGAAGCTCCGAGTATCGTGGGGTTACGTATTATCGAAGAACAGGGAGATGGGAGTCGCATATCTGGGATAGCGGGAAACAAGTCTATTTGGGTGGTTTTGATACTGCCCATTCTGCAGCCAGGGCTTATGATCGAGCTGCAATAAAGTTTCGAGGGGTTCATGCTGATATAAATTTCAATATCAGTGACTACAGTGAAGAGATTAAACAGATGAGTAATTTTAGTAAAGAGGAGTTTGTTCATATTCTTCGAAGGCAGAGCACTGGATTTTCAAGAGGGAGTTCTAAATACAGAGGGGTTACTCTGCACAAGTGTGGGAGATGGGAGGCTCGAATGGGACAGTTCTTGGGGAAGAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATATAATGGAAGGGAAGCTGTTACCAATTTTGATCAGAGTTCCTATGAGATGGAGATTGCTTTTGAATCTCAAAACCAAGACATGGGTGATATTGACTTGAACCTGGGCATTGCCCCTCCTTGTCCATCTGAAGACCAAAAGGAGAACCTGAATGTCTGTGCTCCAAATTTCTGTAGCTTAAATAAATCAGATTCTGATAGATCTGAGTTGATAATGCTTGAAAACCATTCTTCTGTGGCTGTGAGAGCACATCCTTCTTTTATGAGTTGTCCCAATTTCTTTCCTACCTACCAGGGAAGAGCAATGGAGAAGATAATGGAAGTTGAAACTTTACCGAACTGGGGGTGGCGCCAGATCCCAATCTCTTACGGCGGAGCAACTTCCGTCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCTCCGGCTGCCCAGCTTCCTCCCCATCTCCTTCGTCCAGCGCCGCCGTTCCTCCGCTACCATTTTCCCCCCACTAACAGCGTTCCTCATTTCTACTGCAGCACCTGA 1293 47.33 MLDLNLCILSGDSSSGGTGLNPFNLSAPGVQSPISSSVVNADQSNVIGDHGSSSNADCGFTFSFSILNNSNDDQRGRTVAGRFSSDVYSQRKWMVQQSVHPAKKGRRGPKSRSSEYRGVTYYRRTGRWESHIWDSGKQVYLGGFDTAHSAARAYDRAAIKFRGVHADINFNISDYSEEIKQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEIAFESQNQDMGDIDLNLGIAPPCPSEDQKENLNVCAPNFCSLNKSDSDRSELIMLENHSSVAVRAHPSFMSCPNFFPTYQGRAMEKIMEVETLPNWGWRQIPISYGGATSVPFFSTAASSGFPSSPAAQLPPHLLRPAPPFLRYHFPPTNSVPHFYCST 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22670180 22674682 - CaPI482276_04g008450.1 Cam04g0845 124923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0845 430 ProSiteProfiles AP2/ERF domain profile. 207 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0845 430 CDD AP2 206 266 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0845 430 Gene3D AP2/ERF domain 206 265 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0845 430 Gene3D AP2/ERF domain 115 173 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0845 430 ProSiteProfiles AP2/ERF domain profile. 115 171 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0845 430 PRINTS Ethylene responsive element binding protein signature 246 266 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0845 430 PRINTS Ethylene responsive element binding protein signature 208 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0845 430 FunFam AP2-like ethylene-responsive transcription factor 206 266 - -
Cam04g0845 430 FunFam AP2-like ethylene-responsive transcription factor 114 173 - -
Cam04g0845 430 Pfam AP2 domain 206 256 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0845 430 Pfam AP2 domain 115 163 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0845 430 SMART rav1_2 207 270 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0845 430 SMART rav1_2 115 177 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0845 430 SUPERFAMILY DNA-binding domain 206 265 IPR016177 GO:0003677(InterPro)
Cam04g0845 430 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 72 298 - -
Cam04g0845 430 CDD AP2 114 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam04g0845 430 SUPERFAMILY DNA-binding domain 114 173 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0845 Cam-Chr4:22670180 Cam07g1158 Cam-Chr7:25946112 2.20E-45 dispersed
Cam10g2027 Cam-Chr10:34123261 Cam04g0845 Cam-Chr4:22670180 2.50E-97 wgd
Cam02g2147 Cam-Chr2:34252111 Cam04g0845 Cam-Chr4:22670180 1.20E-98 wgd
Cam02g1437 Cam-Chr2:27212324 Cam04g0845 Cam-Chr4:22670180 8.90E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51766 PF00847 AP2 1.40E-10 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0845 K09284 - csv:101211008 699.123