Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam04g0853 | ATGAGTGCTCATGCCGGCAGGCAGAGAGAGTTAAGAGAAACAAGTCACCACGCACAGGATGGTAATGGAAGCGTGAATAATGGTGTATCTGGCAGGGAACAGAGCCCGGTTGAGGAAAATGAGTTGAAGGTCAATGGATTAACTAGAAATACGGAGGATGGTCGAAAAAACACTGTTCATGCCCAGGAAATTCTGCAAATACAACAGCAGCAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTCCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTCGAAAATGATGACTCCACTCGGCATCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGTTATTGCGGCTGCAAATGGACTACACGCATGGAAGATGCTAGAAGATCTGACAAATCACATAGATCTTGTCCTAACAGAGGTGGTCATGCCTTGTTTATCTGGCATTGGTCTTTTATGCAAGATTATGAACCATAAAACGAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAATGAACTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGCCATAGTTCTAGCGGCAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTGAAAAATCAGACAACAACACTGGGAGCAACGATGAAGAAGAAGACAATGAGAGCATTGGTTTCAACATTGGTGATGGAAGTGATGATGGTAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGGATCAAAAACGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGCCAATAATGCTCCAATTCTTTTGACAGCAGGGTGCCAGGTGCAGAAAAAGCAACTTGAAACTGTTACCTTTGGTAAAGTTGAACTAGGCATGCACAGGAATCTTGATTTACAACTTGAACTCTCTACGGAACATCCAACCAAGCTAGTTAACAGAAAACAGAACATTAGGCTTGAGATTGGGTCCAGTGGATTCAACGAGCAGTTCAACAAAGGACATCTTGACCTCAACTCTGAGAGCCCATCCAGCAAACTGAAGTATGAGGAAACAACTGTTACTGGTCTTGCCACCAATCTTTCTGATTGTAAGATGGATGTTGCTGTGTTTGAGGCGCCAAGCAGCCATCCCAAGACCACAGACATTAAGAATAAAGATGTTACAGATTCAGAGGATTTTCCATCCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAACGACAGGGAAAGCGGTACAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCAACGGGAAATGCCGGAAGTAACTCTCCACCTGTTAATGGCTTAGAAGTTACAAATCAAGAGAACATGCAAGATATTCGATCTCATTCAAGTGGTAACCCTCCCAATCAATGCTCAAATGGAGATAGCAATAATATTGACATGGGGTCCACTACTAATAATGCATTTTCCAAGTCCGTAGTTACTAATAACAAGTCAGCAATGGCATCAACAGTCAACTGTTTGTACCCATCGGGAGCTTTCCAACCTGTTAAGAATGACAGTCAATCTGTTCCACAGCAAGCTGATAATGTCAATAATGTCACAACTACAACAATGCAAGCTCAGTCTAATTTTGTGCACAGGGAATCTCAAATGCAGCAACTTTGTCACCCGTATGATCCCACTCATCAGCTTGTCCACAATATTCAACGATTGTCATCTGAGCATAATGATTTTTCATTAAAGAAAATATCTGCAGCTCCCACGCATTGTGGGTCAACCAATGTTTTAAATGGTTCTTTAGAAGGTAATGCAGCAAACTATAGTGTGAACGGTAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGTAGCACTGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAATGGAATAGGTCGAAGTGGGGATGCCAGTGGAAGTGGAAGTGGAAGTGGGAGTGGGAGTGGGAGTGGGAGTGGGAGCGGGAGTGGGAGTGGAAACAAAATGGACCAGAACAAAGTTTCACAAAGGGAAGCTGCCTTGACAAAGTTTCGCCAGAAAAGGAAGGAAAGATGCTTTCGTAAAAAGGTCCGATACCAAAGCAGAAAGAGATTAGCAGAACAGAGACCCCGTGTCAGGGGACAGTTTGTGAGACAAAACACGAGCGAAAACATGAGCAATGCAGGAGATGGCTAA | 2385 | 43.4 | MSAHAGRQRELRETSHHAQDGNGSVNNGVSGREQSPVEENELKVNGLTRNTEDGRKNTVHAQEILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCLSGIGLLCKIMNHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVEKSDNNTGSNDEEEDNESIGFNIGDGSDDGSGTQSSWTKQAIEVESPRPVSASAWDQKRERPDSTCAQVVHSNADAFANNAPILLTAGCQVQKKQLETVTFGKVELGMHRNLDLQLELSTEHPTKLVNRKQNIRLEIGSSGFNEQFNKGHLDLNSESPSSKLKYEETTVTGLATNLSDCKMDVAVFEAPSSHPKTTDIKNKDVTDSEDFPSLELGLKRLRGVQTTGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTGNAGSNSPPVNGLEVTNQENMQDIRSHSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSVVTNNKSAMASTVNCLYPSGAFQPVKNDSQSVPQQADNVNNVTTTTMQAQSNFVHRESQMQQLCHPYDPTHQLVHNIQRLSSEHNDFSLKKISAAPTHCGSTNVLNGSLEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGIGRSGDASGSGSGSGSGSGSGSGSGSGSGNKMDQNKVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENMSNAGDG | 794 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 22739859 | 22746941 | + | CaPI482276_04g008530.1 | Cam04g0853 | 124931 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam04g0853 | 794 | Gene3D | - | 88 | 336 | - | - | |
| Cam04g0853 | 794 | ProSiteProfiles | CCT domain profile. | 740 | 782 | IPR010402 | GO:0005515(InterPro) | |
| Cam04g0853 | 794 | MobiDBLite | consensus disorder prediction | 213 | 230 | - | - | |
| Cam04g0853 | 794 | FunFam | Two-component response regulator-like PRR37 | 89 | 247 | - | - | |
| Cam04g0853 | 794 | Pfam | CCT motif | 740 | 782 | IPR010402 | GO:0005515(InterPro) | |
| Cam04g0853 | 794 | MobiDBLite | consensus disorder prediction | 459 | 541 | - | - | |
| Cam04g0853 | 794 | CDD | psREC_PRR | 91 | 194 | - | - | |
| Cam04g0853 | 794 | MobiDBLite | consensus disorder prediction | 18 | 34 | - | - | |
| Cam04g0853 | 794 | Pfam | Response regulator receiver domain | 91 | 202 | IPR001789 | GO:0000160(InterPro) | |
| Cam04g0853 | 794 | MobiDBLite | consensus disorder prediction | 701 | 742 | - | - | |
| Cam04g0853 | 794 | MobiDBLite | consensus disorder prediction | 474 | 541 | - | - | |
| Cam04g0853 | 794 | MobiDBLite | consensus disorder prediction | 213 | 295 | - | - | |
| Cam04g0853 | 794 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Cam04g0853 | 794 | SUPERFAMILY | CheY-like | 87 | 213 | IPR011006 | - | |
| Cam04g0853 | 794 | SMART | REC_2 | 89 | 204 | IPR001789 | GO:0000160(InterPro) | |
| Cam04g0853 | 794 | MobiDBLite | consensus disorder prediction | 750 | 765 | - | - | |
| Cam04g0853 | 794 | ProSiteProfiles | Response regulatory domain profile. | 90 | 208 | IPR001789 | GO:0000160(InterPro) | |
| Cam04g0853 | 794 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 72 | 356 | IPR045279 | GO:0009736(InterPro) | |
| Cam04g0853 | 794 | MobiDBLite | consensus disorder prediction | 261 | 276 | - | - | |
| Cam04g0853 | 794 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
| Cam04g0853 | 794 | MobiDBLite | consensus disorder prediction | 669 | 794 | - | - | |
| Cam04g0853 | 794 | MobiDBLite | consensus disorder prediction | 669 | 693 | - | - | |
| Cam04g0853 | 794 | MobiDBLite | consensus disorder prediction | 777 | 794 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam01g0009 | Cam-Chr1:551651 | Cam04g0853 | Cam-Chr4:22739859 | 5.80E-43 | dispersed | |
| Cam04g0853 | Cam-Chr4:22739859 | Cam04g1240 | Cam-Chr4:26417010 | 2.10E-12 | dispersed | |
| Cam09g1567 | Cam-Chr9:26431473 | Cam04g0853 | Cam-Chr4:22739859 | 3.20E-06 | dispersed | |
| Cam04g0853 | Cam-Chr4:22739859 | Cam06g1357 | Cam-Chr6:24953391 | 7.30E-18 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 51767 | PF00072 | Response_reg | 1.60E-20 | CL0304 | Cam | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam04g0853 | K12129 | - | csv:101210765 | 1366.67 |