Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0889 ATGAACATGAACATGAACATGAACATGAGCTCCATCAAAACAGCCTCCAATGGAGTATGGCAAGGTGATAATCCTCTCCACTTTGCTTTCCCTCTATTGATCCTTCAATCCGTCCTCATCCTTCTCCTCACTCGCTTCCTCGCCCTCCTCCTCAAGCCCCTCCGCCAGCCCAAAGTCATCGCCGAAATCGTCGGCGGGATTCTACTGGGTCCATCCGCTTTCGGGCGTAACAAAACTTATTTACACCATGTTTTCCCTCCATGGAGTACTCCCATTCTGGAATCCGTCGCAAGTATTGGCTTACTGTTTTTCCTCTTCCTCGTTGGCCTCGAACTCGATTTCTCCTCCATCCGTCGTAGCGGTAGACGAGCTTTCGGAATTGCCTTAGCTGGAATCTCTGTTCCCTTCCTTTCTGGCATCGGTGTTGCCTTCGTCCTTCGTAAAACCGTCGACGGTGCTGATAAAGTCGGTTACGGTCAGTTCATTGTATTCATGGGTGTTGCTCTCTCCATCACTGCTTTTCCTGTTTTAGCTCGCATTTTAGCCGAACTCAAACTCCTCACTACCCAAGTCGGCGAAACCGCAATGGCCGCTGCCGCATTCAACGACGTTGCCGCTTGGATCCTCCTTGCACTCGCCGTTGCCTTGGCCGGTAACGGCGGTGAAGGCGGATCGCAAAAGAGTCCGTTGGTTTCCGTGTGGGTCTTACTTTCGGGAGCCGGCTTCGTGATTTTCATGATGATGGTCACTCGACCGGGAATGAAATGGGTGGCACGGCGGTGCTCGTACGAACACGACGCCGTGGACGAAGCCTATATCTGTTTGACGTTAGTCGGAGTGTTGGTTTCGGGATTTGTGACGGATTTGATCGGAATTCATTCGATTTTTGGGGGATTTATATTTGGATTGACGATTCCGAAAGGGGGAAGATTTGCGGAGAGATTGATTGAGAGAATTGAAGATTTCGTTTCGGGTCTTCTTCTTCCTCTGTATTTTGCTTCCAGTGGATTGAAGACGGATGTGGCCAAAATTAAAGGGGGAAAAGCTTGGGGGTTGCTGGCGTTGGTTATTTCGACGGCGTGCGCCGGTAAGATTCTGGCGACGTTTGTGGCGGCGATGGCGTTTTTGATACCGGCGAGGGAGGCGCTGGCGTTGGGGCTGCTTATGAACACCAAAGGCTTGGTTGAACTCATTGTGCTCAATATTGGGAAGGAGAAAAAGGTTCTTAACGACGAAGTATTCGCCATATTAGTGTTGATGGCACTATTCACAACATTCATCACCACCCCCACCGTGATGGCGGTTTACAAGCCAGCCCGCGGCGGCTCCACCCCGCCTACCCACCGTAAACTCCGCGACCTCTCCGCCGACGACTCCACTGTCGATGACGAGCTCCGAATCCTGGCTTGCCTCCACAGCTCCGGCAACGTGCCGTCCCTCATCACCCTGACGGAGTCAACTCGCAGCACCAAAAATTCCTCCCTCAAACTCTTCGTGATGCACCTGGTTGAACTCACCGAGAGATCCTCTTCCATAATGATGGTCCAACGCGCCCGCAAAAACGGCTTCCCTTTCTTCGCCCGGTTCCGCAAGGCCAGCGAGTGGCGGGACCAAATGGCTGCGGCCTTTCAGGCCTACAGCCAATTGGGCCGAGTCAAGGTCCGGCCCACTACGGCGGTCTCTTCCTTAGCTACTATGCATGAGGATATCTGCCACGTGGCGGATGATAAGAGGGTCACTATGATCATCTTGCCGTTTCATCGGAATTGGAGGGTGTTTGGCGGTGGCGACGACAAGGAGGAGGTGGAGGAGAATGTGGGCCATGGCTGGAGAGTTGTGAACCAACGGGTTTTGAAGAATGCCCCTTGCTCTGTGGCGGTTCTTGTGGACCGTGGATTTGGGGCCGCGTCGGCCCAGACGCCTGGGCCTGGGCCCATAGTTGGTGTGGGCCAAAGAATTTGTGTTGTATTTTTTGGTGGGCCTGATGATCGGGAGGCGCTGGAGTTGGGGGGCCGGATGGCGGAGCATCCGGCGGTGAAGGTCACGGTGGTCAGGTTTCGGCCGACGTCGACGAATGGGATGGAGGGTAGTAATGTCATTTTACGTCCCATGCATTCGAAATCGGGTGACAACCATTATAGCTTCACTACCACTCCAATCAACCGGGAAAAAGAAAAGGAGCAAGATGATGCAGCATTGGGAGAATTCAGAAGCAAATGGGATGCAACAGTTGAGTACATAGAGAAGGAGGTAAGCAACATGAACATGATAGTTGAAGGGGTGGTGAGCCTCGGAAAGGAAGGCGGTTACGACCTAATCGTGGTCGGGAGGGGTCGGGTTCCCTCGAGCATGGTGGCGAAATTAGCGGACCGACCCGCGGAACATGCCGAGTTGGGGCCAGTAGGGGACATATTGGCTAGCTCCGGGAAGGGAATAGTATCTTCAATACTAATAATTCAACAACATGGAGGAGGTGCTCATGTAGAAGAAACTCCAGTTTTGAAGATAGCACAATCCAATAAGAATGAGCAGCCTTTGTCAACTGATGGAGCTTTAATTGATCAGGTATAA 2571 52.59 MNMNMNMNMSSIKTASNGVWQGDNPLHFAFPLLILQSVLILLLTRFLALLLKPLRQPKVIAEIVGGILLGPSAFGRNKTYLHHVFPPWSTPILESVASIGLLFFLFLVGLELDFSSIRRSGRRAFGIALAGISVPFLSGIGVAFVLRKTVDGADKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGNGGEGGSQKSPLVSVWVLLSGAGFVIFMMMVTRPGMKWVARRCSYEHDAVDEAYICLTLVGVLVSGFVTDLIGIHSIFGGFIFGLTIPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIKGGKAWGLLALVISTACAGKILATFVAAMAFLIPAREALALGLLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARGGSTPPTHRKLRDLSADDSTVDDELRILACLHSSGNVPSLITLTESTRSTKNSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKASEWRDQMAAAFQAYSQLGRVKVRPTTAVSSLATMHEDICHVADDKRVTMIILPFHRNWRVFGGGDDKEEVEENVGHGWRVVNQRVLKNAPCSVAVLVDRGFGAASAQTPGPGPIVGVGQRICVVFFGGPDDREALELGGRMAEHPAVKVTVVRFRPTSTNGMEGSNVILRPMHSKSGDNHYSFTTTPINREKEKEQDDAALGEFRSKWDATVEYIEKEVSNMNMIVEGVVSLGKEGGYDLIVVGRGRVPSSMVAKLADRPAEHAELGPVGDILASSGKGIVSSILIIQQHGGGAHVEETPVLKIAQSNKNEQPLSTDGALIDQV 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23020275 23025670 - CaPI482276_04g008890.1 Cam04g0889 124967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0889 856 Gene3D - 466 799 - -
Cam04g0889 856 PANTHER CATION/H + ANTIPORTER 10 824 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Cam04g0889 856 Gene3D - 32 440 IPR038770 -
Cam04g0889 856 FunFam Cation/H(+) antiporter 15 32 442 - -
Cam04g0889 856 Pfam Sodium/hydrogen exchanger family 42 432 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0889 K26731 - - csv:101207589 1486.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0889 Cam-Chr4:23020275 Cam07g0776 Cam-Chr7:19015887 3.00E-211 dispersed
Cam04g0889 Cam-Chr4:23020275 Cam07g0484 Cam-Chr7:6803706 3.70E-92 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g700 Blo01g01126 . Bda01g00243 . . . . . . . Cma03g00436 . Car03g00383 . Sed14g0469 . . Bhi03g01986 Tan03g0976 Cmetu08g1910 . . . . Cla04g00826 Cam04g0889 Cec04g0974 Cco04g1032 Clacu04g0882 Cmu04g0873 Cre04g0930 . Cone10ag0299 . . . Csa04g01471 Chy08g00771 . . . . . . . Bma01g01881 . . Cmo03g00449 . . . . . . Cpe19g00367 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam02g0056 . 4 855 Antiporter Super Family AT2G13620 67.9 0.0e+00 1135.9
Cam04g0889 . 80 850 Antiporter Super Family AT3G53720 69.1 6.5e-290 993.4
Cam07g0779 . 1 779 Antiporter Super Family AT5G41610 70.3 7.1e-311 1063.1
Cam07g0776 . 7 774 Antiporter Super Family AT5G41610 68.0 8.1e-299 1023.1
Cam07g0769 . 37 821 Antiporter Super Family AT5G41610 66.6 2.1e-294 1008.4
Cam07g0766 . 1 780 Antiporter Super Family AT5G41610 64.9 2.4e-287 984.9
Cam04g0889 . 12 824 Antiporter Super Family AT5G41610 51.0 2.0e-209 726.1
Cam07g0776 . 11 791 Antiporter Super Family AT4G23700 65.2 5.3e-290 993.8
Cam07g0769 . 46 838 Antiporter Super Family AT4G23700 64.0 1.3e-283 972.6
Cam07g0766 . 11 778 Antiporter Super Family AT4G23700 63.4 3.8e-280 961.1
Cam07g0779 . 9 779 Antiporter Super Family AT4G23700 63.8 3.8e-280 961.1
Cam07g0779 . 5 779 Antiporter Super Family AT3G17630 64.0 9.8e-273 936.4
Cam07g0776 . 7 791 Antiporter Super Family AT3G17630 61.4 4.3e-268 921.0
Cam07g0769 . 45 819 Antiporter Super Family AT3G17630 62.1 8.1e-267 916.8
Cam07g0766 . 7 778 Antiporter Super Family AT3G17630 61.2 7.8e-262 900.2
Cam04g0889 . 12 826 Antiporter Super Family AT3G17630 51.6 9.4e-207 717.2
Cam07g0776 . 1 775 Antiporter Super Family AT1G64170 57.8 8.5e-240 827.0
Cam07g0769 . 47 821 Antiporter Super Family AT1G64170 57.6 1.2e-238 823.2
Cam07g0779 . 15 782 Antiporter Super Family AT1G64170 57.1 7.7e-233 803.9
Cam07g0766 . 15 780 Antiporter Super Family AT1G64170 56.9 5.5e-231 797.7
Cam02g0056 . 4 855 Antiporter Super Family AT2G13620 67.9 0.0e+00 1135.9
Cam07g0776 . 1 775 Antiporter Super Family AT1G64170 57.8 8.5e-240 827.0
Cam07g0769 . 47 821 Antiporter Super Family AT1G64170 57.6 1.2e-238 823.2
Cam07g0779 . 15 782 Antiporter Super Family AT1G64170 57.1 7.7e-233 803.9
Cam07g0766 . 15 780 Antiporter Super Family AT1G64170 56.9 5.5e-231 797.7
Cam07g0776 . 11 791 Antiporter Super Family AT4G23700 65.2 5.3e-290 993.8
Cam07g0769 . 46 838 Antiporter Super Family AT4G23700 64.0 1.3e-283 972.6
Cam07g0766 . 11 778 Antiporter Super Family AT4G23700 63.4 3.8e-280 961.1
Cam07g0779 . 9 779 Antiporter Super Family AT4G23700 63.8 3.8e-280 961.1
Cam07g0779 . 1 779 Antiporter Super Family AT5G41610 70.3 7.1e-311 1063.1
Cam07g0776 . 7 774 Antiporter Super Family AT5G41610 68.0 8.1e-299 1023.1
Cam07g0769 . 37 821 Antiporter Super Family AT5G41610 66.6 2.1e-294 1008.4
Cam07g0766 . 1 780 Antiporter Super Family AT5G41610 64.9 2.4e-287 984.9
Cam04g0889 . 12 824 Antiporter Super Family AT5G41610 51.0 2.0e-209 726.1
Cam07g0779 . 5 779 Antiporter Super Family AT3G17630 64.0 9.8e-273 936.4
Cam07g0776 . 7 791 Antiporter Super Family AT3G17630 61.4 4.3e-268 921.0
Cam07g0769 . 45 819 Antiporter Super Family AT3G17630 62.1 8.1e-267 916.8
Cam07g0766 . 7 778 Antiporter Super Family AT3G17630 61.2 7.8e-262 900.2
Cam04g0889 . 12 826 Antiporter Super Family AT3G17630 51.6 9.4e-207 717.2
Cam04g0889 . 80 850 Antiporter Super Family AT3G53720 69.1 6.5e-290 993.4
Cam09g0397 . 47 790 Antiporter Super Family AT3G52080 54.3 1.2e-233 806.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004121 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 3 3 1 2 1 2 2 43