Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0898 ATGGTATTTCCTTCCATTCCATCTAATTATCTTGATCCAACAACAACCCATCAATGGCATCAGCAAACAGCAAGCCAACAATCTGGGAGTAGCAGTTTTCAGCTGGCGGGGTCACCAGCACCGCCACAAGTTCGGCCGGTGTCTATGGCAGATCGGGCTCGAATGGCGAACCTGCCGGTGCCGGAGACGGCACTGAAGTGTCCAAGATGTGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTCTCTCAGCCCCGCCATTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGTGGCGCTCTCAGAAGCGTCCCGGTCGGCGGCGGCTACCGCCGGAATACTAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGTCAACCTACTACTACTGAGGTTTCAGGAGGAGAAGCAATGAGATTAAATTACAATAATGCCATTTCCACACAAAATGAAGGAGCTGTGGATTCAACTCATCATCCCATTGGGATAGCAAACTTTTTAGGGTTTGATCAAATTCAATGGCGACCACAGCTTCAACTTCACCAAACACAACAGTCTCCATTGCTTGTAAATTCAGCTCGGTTGCTCGGAAATGGTGGCATCGAGGCATCGCCGAGCTATAGCATCGTCAGACAAATTCAAAAGAAGATGGAAGCGACGACGAAAATGGAGGAAGATGGGCAACAAGTAGAGATGAATGTTGCAAAGCCATTTTGGGGAGTTGTTGGAGGAAGTGATCATCGCCATTATTGGAGTGGTTTTAATCCTTCATCTTCTTCCCATTCATAA 813 47.36 MVFPSIPSNYLDPTTTHQWHQQTASQQSGSSSFQLAGSPAPPQVRPVSMADRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNTKRTKSTSKSPVNSQCQPTTTEVSGGEAMRLNYNNAISTQNEGAVDSTHHPIGIANFLGFDQIQWRPQLQLHQTQQSPLLVNSARLLGNGGIEASPSYSIVRQIQKKMEATTKMEEDGQQVEMNVAKPFWGVVGGSDHRHYWSGFNPSSSSHS 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23100913 23102429 + CaPI482276_04g008980.1 Cam04g0898 124976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0898 270 MobiDBLite consensus disorder prediction 22 45 - -
Cam04g0898 270 ProSitePatterns Zinc finger Dof-type signature. 67 103 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam04g0898 270 Pfam Dof domain, zinc finger 64 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam04g0898 270 MobiDBLite consensus disorder prediction 110 141 - -
Cam04g0898 270 MobiDBLite consensus disorder prediction 123 141 - -
Cam04g0898 270 MobiDBLite consensus disorder prediction 22 38 - -
Cam04g0898 270 ProSiteProfiles Zinc finger Dof-type profile. 65 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam04g0898 270 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 52 190 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0898 Cam-Chr4:23100913 Cam07g0322 Cam-Chr7:4321424 3.10E-37 dispersed
Cam10g2068 Cam-Chr10:34456661 Cam04g0898 Cam-Chr4:23100913 3.50E-38 wgd
Cam02g2096 Cam-Chr2:33819555 Cam04g0898 Cam-Chr4:23100913 3.30E-36 wgd
Cam03g0159 Cam-Chr3:2481706 Cam04g0898 Cam-Chr4:23100913 1.30E-35 wgd
Cam04g0898 Cam-Chr4:23100913 Cam09g2036 Cam-Chr9:34913714 3.20E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51770 PF02701 zf-Dof 3.50E-31 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0898 - - - 0.0