Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam04g0911 | ATGGCTTCTCTCTCTCTCCTCTGCTCCATTGCCTTCGCTTCTTTCTCCTCCCTCTTCCTCCTCTCTCACGCCAGAATCCCCGGTGTCTACTCCGGCGGCCCCTGGCAGGACGCTCATGCCACCTTCTATGGCGGCAGTGATGCCTCCGGAACCATGGGTGGTGCTTGTGGGTATGGGAATCTCTACAGCCAGGGCTATGGCGTCAACACAGCCGCCCTCAGTACTGCTCTCTTCAACAATGGCTTAAGCTGTGGTGCTTGCTTCGAGATCAAGTGTGCTAATGACCCTAGATGGTGCCATCCTGGTAGCCCATCCATTTTCATTACAGCTACCAATTTTTGTCCCCCGAATTTCGCACTGCCAAATGACAATGGCGGTTGGTGTAACCCTCCTCGTACTCATTTCGATCTCGCTATGCCTATGTTCCTCAAGATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCACTTACCGCCGGGTGCCATGTAGGAAACAAGGGGGAATCAGATTCACTATCAACGGTTTCCGTTACTTCAACTTGGTATTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGAAGGTTAGCGTCAAAGGATCAAACAGCGATTGGATGAGCATGAGCCGTAACTGGGGACAAAATTGGCAATCCAACTCTGTTTTGGTGGGCCAGGCCCTTTCCTTCCGCGTCACCGGCAGTGACCGTCGTACCTCAACCTCATGGAACGTGGCACCATCTAATTGGCAGTTCGGTCAGACCTTCACGGGAAAGAATTTCCGCGTTTGA | 786 | 53.56 | MASLSLLCSIAFASFSSLFLLSHARIPGVYSGGPWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVTYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKVSVKGSNSDWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV | 261 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 23247577 | 23249033 | - | CaPI482276_04g009110.1 | Cam04g0911 | 124989 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam04g0911 | 261 | SUPERFAMILY | PHL pollen allergen | 164 | 256 | IPR036749 | - | |
| Cam04g0911 | 261 | FunFam | Expansin | 167 | 259 | - | - | |
| Cam04g0911 | 261 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 53 | 167 | IPR007112 | - | |
| Cam04g0911 | 261 | Pfam | Lytic transglycolase | 70 | 157 | IPR009009 | - | |
| Cam04g0911 | 261 | Pfam | Expansin C-terminal domain | 168 | 245 | IPR007117 | - | |
| Cam04g0911 | 261 | PRINTS | Expansin/Lol pI family signature | 74 | 92 | IPR007118 | GO:0005576(InterPro) | |
| Cam04g0911 | 261 | PRINTS | Expansin/Lol pI family signature | 52 | 70 | IPR007118 | GO:0005576(InterPro) | |
| Cam04g0911 | 261 | PRINTS | Expansin/Lol pI family signature | 242 | 256 | IPR007118 | GO:0005576(InterPro) | |
| Cam04g0911 | 261 | PRINTS | Expansin/Lol pI family signature | 204 | 218 | IPR007118 | GO:0005576(InterPro) | |
| Cam04g0911 | 261 | PRINTS | Expansin/Lol pI family signature | 34 | 49 | IPR007118 | GO:0005576(InterPro) | |
| Cam04g0911 | 261 | PRINTS | Expansin/Lol pI family signature | 150 | 166 | IPR007118 | GO:0005576(InterPro) | |
| Cam04g0911 | 261 | Gene3D | - | 23 | 163 | IPR036908 | - | |
| Cam04g0911 | 261 | PRINTS | Expansin signature | 242 | 258 | IPR002963 | GO:0009664(InterPro) | |
| Cam04g0911 | 261 | PRINTS | Expansin signature | 142 | 155 | IPR002963 | GO:0009664(InterPro) | |
| Cam04g0911 | 261 | PRINTS | Expansin signature | 106 | 116 | IPR002963 | GO:0009664(InterPro) | |
| Cam04g0911 | 261 | PRINTS | Expansin signature | 125 | 142 | IPR002963 | GO:0009664(InterPro) | |
| Cam04g0911 | 261 | PRINTS | Expansin signature | 166 | 178 | IPR002963 | GO:0009664(InterPro) | |
| Cam04g0911 | 261 | PRINTS | Expansin signature | 92 | 103 | IPR002963 | GO:0009664(InterPro) | |
| Cam04g0911 | 261 | PRINTS | Expansin signature | 213 | 234 | IPR002963 | GO:0009664(InterPro) | |
| Cam04g0911 | 261 | PRINTS | Expansin signature | 65 | 79 | IPR002963 | GO:0009664(InterPro) | |
| Cam04g0911 | 261 | PRINTS | Expansin signature | 178 | 199 | IPR002963 | GO:0009664(InterPro) | |
| Cam04g0911 | 261 | FunFam | Expansin | 24 | 163 | - | - | |
| Cam04g0911 | 261 | PANTHER | EXPANSIN-A15 | 17 | 259 | IPR002963 | GO:0009664(InterPro) | |
| Cam04g0911 | 261 | CDD | DPBB_EXPA_N | 34 | 162 | - | - | |
| Cam04g0911 | 261 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 177 | 256 | IPR007117 | - | |
| Cam04g0911 | 261 | SMART | dpbb_1 | 70 | 157 | IPR007112 | - | |
| Cam04g0911 | 261 | SUPERFAMILY | Barwin-like endoglucanases | 34 | 185 | IPR036908 | - | |
| Cam04g0911 | 261 | Gene3D | - | 167 | 259 | IPR036749 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam04g0911 | Cam-Chr4:23247577 | Cam07g0331 | Cam-Chr7:4460313 | 4.80E-136 | dispersed | |
| Cam04g0974 | Cam-Chr4:23848837 | Cam04g0911 | Cam-Chr4:23247577 | 2.10E-92 | transposed | |
| Cam07g0755 | Cam-Chr7:18214357 | Cam04g0911 | Cam-Chr4:23247577 | 2.70E-78 | transposed | |
| Cam02g2077 | Cam-Chr2:33675434 | Cam04g0911 | Cam-Chr4:23247577 | 2.50E-137 | wgd | |
| Cam03g0142 | Cam-Chr3:2342561 | Cam04g0911 | Cam-Chr4:23247577 | 1.50E-134 | wgd | |
| Cam04g0911 | Cam-Chr4:23247577 | Cam09g2011 | Cam-Chr9:34743180 | 1.20E-121 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam04g0911 | - | - | - | 0.0 |