Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0924 ATGGCGGCGATCTTCTTCCTCATCTTAATTCTTTTGATTTTCATTTCTCTAGCTTCTGGAGATCAAAGCTTCATCTTCAATGGCTTCAGCTCCGGCGATCTCATCCTCGACGGCGTCGCCGAAGTAACCTCCAATGGCCTTTTGAAGCTCACCAACACGTACGACCAACAAATTGGCCACGCCTTTTACCCCAATTCCATTTCCTTCAAATCCCCATCAAACAATTCCTCAATTTCCTCCTTCTCTGCAACTTTCGTCTTCGCCATAATATCAGAGTACGACGATCTTGGCGGCCATGGAATCGCCTTCGTCGTTTCTCCGACGAGGGGTCTCCCCGGAGCTCGGCCGAGCGAAAACCTCGGTATATTCAACGAATCCAACAACGGGAACGAAGCGAATCACATCTTCGCCGTTGAAATCGACACGATTCAGAATCTTGATCTTAAAGACATCAACAAGAATCATGTCGGAATCAACATTAACGGACTGGTATCGGAGCGGGCGGAGCGAGCAGGGTATTGGGTCGACGGAAAATTCAGGAATTTGACGTTAATCAGTGGTGAACCGATGCAACTTTGGGTTGAATACGACGGTTTTGAAAAGCAAATCAACGTTACTCTGTCTCCAATTGAAATCAGAGATAAACCCAAAATTCCCCTTTTATCTTACCGGCGAGACTTATCGTCGGTCATCAATGACATCATGTACATCGGATTCTCTTCATCGACAGGCTCCATTACGACGTTGCATTACATTTTAGGTTGGAGCTTCAGCGTCAATGGCGAAGCGCAGAGGCTTAATCTGTCTCAACTTCCCAAGCTTCCATCTCGGCCGGGAAAAAAACAGAGACGATCTAAATTCTTGACAGTGGGATTACCGTTGATTTCTGTTTCATTAGCTTCAATGACAGTTCTGGGGGTAATTTATTTCATTCACCGGAGACGGAAATTCGCAGAGATTTTAGAGGATTGGGAGCTGGAATACGGACCCCAGAGATTCAAATACAAGGATTTATACAGAGCAACAAAGGGATTCAGAGAAAAGGAATTTCTGGGATTTGGTGGATTCGGAAGAGTTTACAAAGGGGTTTTACCAAATTCAAAAATCGAAGTAGCAGTGAAGAAAATCTCTCACGAATCGAGACAGGGGATGAAGGAATTCGTGGCGGAGATAGTGAGTGTAGGGCGGCTCCGGCACCGGAACTTGGTGACGCTGTTGGGGTATTGTCGGCGGAAAGGGGAGCTGTTTTTGGTGTACGATTACATGAGGAATGGAAGCTTGGATACGTATTTACATGAGTTGCCGGAAATTACGATAAATTGGGAACAGAGATTTGAGATAATAAAAGGAGTGGCGTCGGGGCTGTTTTATCTTCATGAACAGTGCGAGAAAGTGGTGATTCATAGAGATGTGAAGGCGAGTAATGTGTTGCTTGATGATGAATTCAATGGCCGATTGGGGGATTTCGGTTTGGCAAAAATGTATGAGCGTGGCGCCGATCCTCGAACCACTCACGTCGTCGGAACTCTTGGGTATTTAGCGCCAGAGCACATAAGAACAGGGAGAGCCACAACAAGAACAGACGTATACGCATTTGGGGCATTTCTTCTAGAAGTGGCCTGTGGAAGAAGGCCAATTCATCCTCAAGAAGACGCCGACGATTTCATTTTAATGGATTGGGTTTTCTCTTGTTGGACAAACGGCCAAATTCTCCGAACCGCCGATCCCAAATTGGGAGGTAATTTCGAACCTTCTCAGCTCGAATTGGTTCTCAAACTTGGCTTGCTCTGCTCTCACTACTCCCCCGCCGTTCGCCCCACCATGCACCAGGTTCTGCAGTATTTGCAGGCCGATGCGCCGCTGCCGGACCTCGCCTCGCTCCGGTGGCGCCTCTCCGGAAGTGGGTTTTTCAACTTCAGACCTCGCGACGGCGATGGCGATAGCGATGGGTTGGATGATTTTACGATGTCTTATCCATTATCGACGGGGAGGAATGTGACGAGTTCGTCGTCGGTTGCGGAGTCTATTCTGTCGGAAGGCCGCTGA 2046 47.7 MAAIFFLILILLIFISLASGDQSFIFNGFSSGDLILDGVAEVTSNGLLKLTNTYDQQIGHAFYPNSISFKSPSNNSSISSFSATFVFAIISEYDDLGGHGIAFVVSPTRGLPGARPSENLGIFNESNNGNEANHIFAVEIDTIQNLDLKDINKNHVGININGLVSERAERAGYWVDGKFRNLTLISGEPMQLWVEYDGFEKQINVTLSPIEIRDKPKIPLLSYRRDLSSVINDIMYIGFSSSTGSITTLHYILGWSFSVNGEAQRLNLSQLPKLPSRPGKKQRRSKFLTVGLPLISVSLASMTVLGVIYFIHRRRKFAEILEDWELEYGPQRFKYKDLYRATKGFREKEFLGFGGFGRVYKGVLPNSKIEVAVKKISHESRQGMKEFVAEIVSVGRLRHRNLVTLLGYCRRKGELFLVYDYMRNGSLDTYLHELPEITINWEQRFEIIKGVASGLFYLHEQCEKVVIHRDVKASNVLLDDEFNGRLGDFGLAKMYERGADPRTTHVVGTLGYLAPEHIRTGRATTRTDVYAFGAFLLEVACGRRPIHPQEDADDFILMDWVFSCWTNGQILRTADPKLGGNFEPSQLELVLKLGLLCSHYSPAVRPTMHQVLQYLQADAPLPDLASLRWRLSGSGFFNFRPRDGDGDSDGLDDFTMSYPLSTGRNVTSSSSVAESILSEGR 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23350593 23355905 - CaPI482276_04g009240.1 Cam04g0924 125002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0924 681 MobiDBLite consensus disorder prediction 658 681 - -
Cam04g0924 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g0924 681 Pfam Legume lectin domain 22 272 IPR001220 GO:0030246(InterPro)
Cam04g0924 681 CDD lectin_legume_LecRK_Arcelin_ConA 23 261 IPR001220 GO:0030246(InterPro)
Cam04g0924 681 ProSitePatterns Protein kinases ATP-binding region signature. 351 375 IPR017441 GO:0005524(InterPro)
Cam04g0924 681 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 277 IPR013320 -
Cam04g0924 681 Gene3D - 21 272 - -
Cam04g0924 681 FunFam L-type lectin-domain containing receptor kinase V.9 21 264 - -
Cam04g0924 681 Pfam Protein kinase domain 346 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g0924 681 FunFam Lectin-domain containing receptor kinase A4.3 330 421 - -
Cam04g0924 681 CDD STKc_IRAK 351 616 - -
Cam04g0924 681 Gene3D Phosphorylase Kinase; domain 1 330 421 - -
Cam04g0924 681 ProSiteProfiles Protein kinase domain profile. 345 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g0924 681 SUPERFAMILY Protein kinase-like (PK-like) 326 621 IPR011009 -
Cam04g0924 681 FunFam L-type lectin-domain containing receptor kinase S.4 422 628 - -
Cam04g0924 681 Gene3D Transferase(Phosphotransferase) domain 1 422 627 - -
Cam04g0924 681 SMART serkin_6 345 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g0924 681 PANTHER - 24 628 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0924 Cam-Chr4:23350593 Cam10g2198 Cam-Chr10:35397210 4.60E-162 dispersed
Cam04g0924 Cam-Chr4:23350593 Cam04g0926 Cam-Chr4:23374184 2.50E-168 proximal
Cam06g0804 Cam-Chr6:11070220 Cam04g0924 Cam-Chr4:23350593 1.00E-65 transposed
Cam10g2096 Cam-Chr10:34632247 Cam04g0924 Cam-Chr4:23350593 4.10E-187 wgd
Cam10g2007 Cam-Chr10:33952059 Cam04g0924 Cam-Chr4:23350593 2.10E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85124 PF00069 Pkinase 6.60E-49 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0924 - - - 0.0