Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0961 ATGCTGGCCACAACCTGCATTGTGCTGCTAGCTTTGCTGCTACCCTCCAGCTTGCCGCTCCGTGCCGGTGCTGGTACCCCCGCCGCCGCTCTCAACCTCACTCTCCCCGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGGAAAGTAAATGCTTCCTTAACGAGAAGGCAATTGCTCCAAATCTCAGAGAAGGATGATTCTTCTTCTTGCTACACCGGGAACCCCATCGACGACTGCTGGAAATGCGATCCAAATTGGCCAAACAACCGCCAGCGCCTCGCCGATTGCGCCATAGGATTCGGCCAGTACGCTCTCGGCGGCAAAAATGGCGAGTTCTACATAGTCACAGACGATTCGGACGACGATGCGGTAAATCCAAAGCCCGGAACATTACGATACGCCGTGATACAGCCGCAACCTCTCTGGATCGTCTTCCCCGCCAACATGCTCATCAAACTCAAACAGGAACTCATCTTCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAATGTCCATATAGTCGGCGGTGGCTGCATTACATTGCAGTACATAAGCAATGTCATCATCCACAACATCCATATCCACCATTGTTATCCATCAGGTAACACCATGGTCCGATCAAGTCCGACGCATTACGGGTACCGGACGAAATCGGACGGCGACGGGATATCGATCTTCGGATCGAAGGATATATGGATTGATCATTGTTCATTGTCGCATTGCAAAGATGGGCTGATCGATGCGGTGATGGGCTCCACCGGAATCACGATTTCAAACAACTATTTCTCACATCACGATGAAGTTATGCTGTTGGGTCACAGCGATCACTACTTGCCGGATTCCGGAATGCAGGTTACAATAGCATTCAACCACTTCGGAGAGAAGCTGGTGCAAAGGATGCCACGATGCCGATTAGGTTACATTCACGTCGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGCGGCAGTGGAAACCCCACCATCAACAGCCAAGGCAACCGCTACACCGCCCCTTACGACCGCAACGCCAAGGAAGTAACCAAGCGAGTCGAAACTTCCGAGTCCGAGTGGCGCGGCTGGAACTGGCGCTCCGAGGGCGATATCCTCGTAAACGGCGCTTTCTTCGTCACTTCCGGCCAAGGCCTTGAAGTCAAGTACGAGAAGGCTTACAGCGTCGAACCTAAGTCCGCCGCCCTAATTGACCAGCTCACTTGGCACGCCGGCCCGCTCGGCGTCGGCGGTAGGGACAATAATTTGGGAATGTGGACTACTGGCCCTAATGGCGGAGGCTTTGCGCTTGGGTCTGGGATGGATTACACTGACGACATGTCGGAAAGTTATTTTGTTAGGGTTTTTTCTCTTTTGTTGTGCTCTTTTTGCGCATTGGTGCTTGCCTTTGTGCTATGA 1431 52.9 MLATTCIVLLALLLPSSLPLRAGAGTPAAALNLTLPGQHPSPELVAQEVHRKVNASLTRRQLLQISEKDDSSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDAVNPKPGTLRYAVIQPQPLWIVFPANMLIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDHYLPDSGMQVTIAFNHFGEKLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETSESEWRGWNWRSEGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSAALIDQLTWHAGPLGVGGRDNNLGMWTTGPNGGGFALGSGMDYTDDMSESYFVRVFSLLLCSFCALVLAFVL 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23668461 23671777 + CaPI482276_04g009610.1 Cam04g0961 125039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0961 476 PRINTS Pollen allergen Amb family signature 397 420 IPR018082 -
Cam04g0961 476 PRINTS Pollen allergen Amb family signature 124 149 IPR018082 -
Cam04g0961 476 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Cam04g0961 476 PRINTS Pollen allergen Amb family signature 368 392 IPR018082 -
Cam04g0961 476 PRINTS Pollen allergen Amb family signature 160 176 IPR018082 -
Cam04g0961 476 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Cam04g0961 476 PRINTS Pollen allergen Amb family signature 224 245 IPR018082 -
Cam04g0961 476 PRINTS Pollen allergen Amb family signature 100 117 IPR018082 -
Cam04g0961 476 Pfam Pectate lyase 158 341 IPR002022 -
Cam04g0961 476 PANTHER PECTATE LYASE 18-RELATED 24 420 IPR045032 GO:0030570(InterPro)
Cam04g0961 476 SUPERFAMILY Pectin lyase-like 73 402 IPR011050 -
Cam04g0961 476 Gene3D - 77 419 IPR012334 -
Cam04g0961 476 FunFam Pectate lyase 77 419 - -
Cam04g0961 476 SMART amb_all 152 349 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0961 Cam-Chr4:23668461 Cam08g1230 Cam-Chr8:18675532 1.10E-178 dispersed
Cam04g0961 Cam-Chr4:23668461 Cam05g2332 Cam-Chr5:31373001 3.10E-181 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0961 K01728 - csv:101203012 923.309