Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0967 ATGCCGATCCGTAACATTGCAATTGGAAGGCCCGAAGAGGCTACTCATCCAGATGCTTTGAAGGCTGGGTTGGCTGAGTTCATTTCCACCTTGATCTTTGTTTTTGCTGGCCAAGGTTCCGGCATAGCCTTCAGTAAGCTTACCGAAGGCGGCGCCACCACTCCCGCCGGTCTCATCTCCGCCTCCATCGCCCACGCCTTCGCCCTTTTTGTTGCCGTCTCCGTTGGCGCTAACATCTCTGGTGGCCATGTCAACCCCGCCGTTACCTTCGGTGCCTTCGTCGGTGGTAACATCACCCTCCTACGTGGCATCATCTACTGGATTGCTCAACTCCTTGGATCCGTTGTCGCTTGCTTGCTCCTTAAATTCGTCACCGGCTTGCCCACCGGAAGCTTCGCTCTGTCAGCTGGAGTTGGAGAAATTAACGCCTTCGTTTTCGAGATCGTAATGACCTTCGGATTGGTGTACACAGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACTATTGCACCCATCGCAATCGGTTTCATCGTCGGAGCTAACATTTTGGCCGGCGGAGCATTCACCGGAGCATCCATGAACCCGGCCGTGGCCTTCGGCCCATCAGTAGTGAGCTGGTCATGGAGCAGCCACTGGGTCTACTGGGCCGGGCCTCTGATCGGAGGTGGGCTCGCTGGTCTCATCTACGAGTTCATCTTCATTTCCAACACCCACGAGCAGCTCCCAACCACCGACTACTAA 753 55.78 MPIRNIAIGRPEEATHPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTEGGATTPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVVACLLLKFVTGLPTGSFALSAGVGEINAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWSSHWVYWAGPLIGGGLAGLIYEFIFISNTHEQLPTTDY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23710415 23711660 - CaPI482276_04g009670.1 Cam04g0967 125045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0967 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cam04g0967 250 CDD MIP 21 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0967 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Cam04g0967 250 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Cam04g0967 250 FunFam Probable aquaporin TIP1-1 4 250 - -
Cam04g0967 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0967 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0967 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0967 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0967 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0967 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0967 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam04g0967 250 PANTHER AQUAPORIN-8 5 246 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0967 Cam-Chr4:23710415 Cam05g2298 Cam-Chr5:31095131 2.40E-28 dispersed
Cam01g0423 Cam-Chr1:4653305 Cam04g0967 Cam-Chr4:23710415 1.00E-79 transposed
Cam01g0504 Cam-Chr1:5337987 Cam04g0967 Cam-Chr4:23710415 2.50E-44 transposed
Cam01g1519 Cam-Chr1:28726109 Cam04g0967 Cam-Chr4:23710415 4.80E-80 transposed
Cam08g1685 Cam-Chr8:23122376 Cam04g0967 Cam-Chr4:23710415 1.20E-64 transposed
Cam09g0182 Cam-Chr9:2580487 Cam04g0967 Cam-Chr4:23710415 8.20E-77 transposed
Cam09g2056 Cam-Chr9:35147693 Cam04g0967 Cam-Chr4:23710415 4.70E-96 transposed
Cam10g1958 Cam-Chr10:33529225 Cam04g0967 Cam-Chr4:23710415 2.90E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0967 K09873 - csv:101204225 463.766