Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam04g0980 | ATGGCTTCTACTCTCTGTTTTCCCTCAATCACTTTCCCCTCCTCTCCCTTCCACAAACGAATCCCTCTCAGACGAAGAACCCCATCTCCTTATCCCTCCATTAAATCCTCCATTGACGAAGGAGGAAATCCCTCAACGCCCGCAAAGCTTAAGAACTCCACAAGCACTGCAAAATCCGGCTCCTGGGTCAGCCCTGATTGGCTCACCTCTCTAACTCGTTACATTACTCTAGGGCAGGGCGACGACTCCGGCATCCCCATTGCAACTGCCAAGCTCGATGACGTTTCTGATCTTCTCGGCGGTGCTCTTTTCCTTCCACTTTTCAAGTGGATGAATGACTATGGACCCATTTACAGGCTCGCTGCTGGCCCTAGAAATTTCGTCGTCGTTAGTGATCCTGCCATTGCTAAGCACGTTCTCAGGAACTATGGGACTTACGCTAAAGGCCTTGTTTCTGAGGTTTCCGAGTTCTTGTTTGGGTCAGGTTTCGCCATTGCAGAAGGCCCTCTCTGGACGGTTCGCCGTAGGGCTGTGGTTCCATCTCTTCACAAGAAGTACTTATCGGTTATTGTCGATCGAGTATTTTGTAAATGTGCCACGAGATTGGTGGAGAAGCTGGAAAAGGATGCATTAAATAATAATTCGGTTAACATGGAGGAAAAGTTTTCTCAACTAACTCTTGATGTTATTGGTCTATCTGTATTCAACTACAGTTTTGATTCTCTCTCTACTGACAGCCCTGTGATTGATGCAGTTTACACTGCTTTGAAAGAGGCAGAGGCTCGTTCTACTGATATTTTACCATATTGGAAGATTAAGGCTCTGTGTAAGATAATCCCAAGACAGATAAAAGCTGAAGAAGCAGTTACGGTGATCAGGAGAACTGTTGAAGAACTCATTGCCAAGTGCAAAGAAATTGTTGAAAGTGAGGGTGAGCGTATTGATGAGGAGGAATATGTGAATGATGCTGATCCAAGCATCCTCCGATTTCTGCTGGCCAGTAGAGAAGAGGTCTCAAGTGTACAGTTACGAGACGACCTATTGTCCATGTTGGTTGCTGGGCATGAAACTACTGGTTCTGTTCTGACTTGGACACTGTATCTTTTAAGTAAGCATTCCTCATCATTGGTCAAGGCACAAAATGAAGTTGATAGAGTGTTACAAGGAAGGCCTCCTTCTTATGAAGATACGAAGGAACTTAAATATTTGACACGTTGTATCCTTGAGTCAATGCGACTTTACCCACATCCACCTGTTTTGATAAGAAGAGCTCAAGTTGCCGACATACTCCCCGGAAATTACAAGGTTAACGCTGGTCAAGATATCATGATTTCAGTATATAACATCCATCGCTCTTCCCAGGTCTGGGAACAAGCAGAAGAGTTTATACCAGAAAGATTTGACTTGGAAGGCCCTGTGCCTAATGAAAGCAATACAGATTTCAGATTTATTCCGTTCAGCGGTGGACCTCGAAAATGTGTCGGTGATCAATTTGCCTTGCTTGAAGCTATTGTTGCACTTGCCATATTTCTACAGCATATGAATTTCGAGCTGGTTCCAAATCAGACCATTGGGATGACTACTGGAGCAACTATACATACAACAAACGGTTTGTACATGAAACTCAGCCAAAGGAAGCTGACCCAAGAGTTAGTTTCTCCTGCATCTTCAAGATGGCGGTGGCCGGAGATGGAAGCCGGGTGGTTGCTGATGGCTTTCCTTGGTGATGCCTCCTGCATAATTTGCCTCAGTGGCTCGTGTTTCGCCAACGTCGTTATGACCAATGTCATGGCGTCTGCGTCTGGGACGGGGAATATTGATGATTGTTTTGTGGTGCCTGGGTTGGAGCATAGGGTAGAGGTCACCAAGGCTCAATTGCCCATTCATGGGGTTTTGGGTGGTGGGATGATGAAGTTTTTGGAGCAAATTGGTGAGGCTGAGAAGAAATGTTATGGGATGATTGTTAATAGCTTTGAGGAGTTGGAGGGTTCTTATGTAACACAATTGAAGAAGAAGGTTAGAGGAAATAGAGTTTGGTGTGTTGGACCTGTTTCTTCTTGTAATAAACATTATGGTGGACAAAGCTCAAAGAGGCAAAGGCTCAACAGAGGAGGGGCAGGACAACAATAA | 2130 | 45.07 | MASTLCFPSITFPSSPFHKRIPLRRRTPSPYPSIKSSIDEGGNPSTPAKLKNSTSTAKSGSWVSPDWLTSLTRYITLGQGDDSGIPIATAKLDDVSDLLGGALFLPLFKWMNDYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTYAKGLVSEVSEFLFGSGFAIAEGPLWTVRRRAVVPSLHKKYLSVIVDRVFCKCATRLVEKLEKDALNNNSVNMEEKFSQLTLDVIGLSVFNYSFDSLSTDSPVIDAVYTALKEAEARSTDILPYWKIKALCKIIPRQIKAEEAVTVIRRTVEELIAKCKEIVESEGERIDEEEYVNDADPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKHSSSLVKAQNEVDRVLQGRPPSYEDTKELKYLTRCILESMRLYPHPPVLIRRAQVADILPGNYKVNAGQDIMISVYNIHRSSQVWEQAEEFIPERFDLEGPVPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAIFLQHMNFELVPNQTIGMTTGATIHTTNGLYMKLSQRKLTQELVSPASSRWRWPEMEAGWLLMAFLGDASCIICLSGSCFANVVMTNVMASASGTGNIDDCFVVPGLEHRVEVTKAQLPIHGVLGGGMMKFLEQIGEAEKKCYGMIVNSFEELEGSYVTQLKKKVRGNRVWCVGPVSSCNKHYGGQSSKRQRLNRGGAGQQ | 709 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 23922818 | 23937802 | - | CaPI482276_04g009800.1 | Cam04g0980 | 125058 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam04g0980 | 709 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 569 | 687 | - | - | |
| Cam04g0980 | 709 | MobiDBLite | consensus disorder prediction | 30 | 58 | - | - | |
| Cam04g0980 | 709 | SUPERFAMILY | Cytochrome P450 | 100 | 545 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam04g0980 | 709 | CDD | CYP97 | 105 | 539 | - | - | |
| Cam04g0980 | 709 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 486 | 495 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cam04g0980 | 709 | PRINTS | P450 superfamily signature | 353 | 370 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam04g0980 | 709 | PRINTS | P450 superfamily signature | 405 | 416 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam04g0980 | 709 | PRINTS | P450 superfamily signature | 493 | 504 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam04g0980 | 709 | PRINTS | P450 superfamily signature | 484 | 493 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam04g0980 | 709 | Gene3D | Glycogen Phosphorylase B; | 576 | 702 | - | - | |
| Cam04g0980 | 709 | Gene3D | Cytochrome P450 | 90 | 560 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam04g0980 | 709 | PANTHER | CYTOCHROME P450 FAMILY 4 | 102 | 543 | IPR050196 | GO:0009507(PANTHER)|GO:0009974(PANTHER)|GO:0016117(PANTHER) | |
| Cam04g0980 | 709 | MobiDBLite | consensus disorder prediction | 23 | 58 | - | - | |
| Cam04g0980 | 709 | Pfam | Cytochrome P450 | 107 | 528 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam04g0980 | 709 | PRINTS | E-class P450 group I signature | 111 | 130 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam04g0980 | 709 | PRINTS | E-class P450 group I signature | 362 | 388 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam04g0980 | 709 | PRINTS | E-class P450 group I signature | 445 | 469 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam04g0980 | 709 | PRINTS | E-class P450 group I signature | 342 | 359 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam04g0980 | 709 | PRINTS | E-class P450 group I signature | 493 | 516 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam04g0980 | 709 | PRINTS | E-class P450 group I signature | 483 | 493 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam04g0980 | Cam-Chr4:23922818 | Cam05g2552 | Cam-Chr5:33310929 | 2.40E-36 | dispersed | |
| Cam04g0978 | Cam-Chr4:23916378 | Cam04g0980 | Cam-Chr4:23922818 | 4.70E-16 | proximal | |
| Cam07g1460 | Cam-Chr7:29252934 | Cam04g0980 | Cam-Chr4:23922818 | 9.70E-111 | transposed | |
| Cam10g0786 | Cam-Chr10:14784390 | Cam04g0980 | Cam-Chr4:23922818 | 3.30E-130 | transposed | |
| Cam04g0980 | Cam-Chr4:23922818 | Cam08g1956 | Cam-Chr8:25471347 | 3.30E-14 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam04g0980 | K09837 | - | csv:101204961 | 1038.87 |