Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g0981 ATGCGCCTGTTCTTTTGCCTCATATCCGCCTTAGCCTCCGTCGTCGTCGTCCTCGTCACGGGCACGGCGGCTACCTCCCCCAACCATTTCCCTCTCTACAGAGCCTTCCCCCACTTTCCCACTCCCCACTTCCACTCCCTCACAGCTCGCGACCGCCTCCGCCATTCCCGCGTCTTGCGACGACTCGCCGGTGGCATCGTCAATTTCTCCGTTAAAGGCTCCTCCGATCCTTTCATCGGGCTTTATTTCACCAAAGTGAAGTTGGGAAATCCTGAGAGGGAATTCAATGTGCAGATCGATACTGGGAGTGATATTTTGTGGGTCACTTGCAGTCCTTGCGATGGCTGTCCTCAATCAAGCGGACTTGGAGTTGAACTCAACTTATTTGATGCTACAAAGTCATCCTCTGCCAGGGTTGTTCCCTGCTCAGATCCAATATGTGCTGCAATTCCAACCACCACAGATCAATGCTTATCCCAGGCTGACCATTGCGGTTACACCTTCCATTATCGGGATAGAAGTGGGACGTCGGGCTTTTATGTTACTGATTTGATGCATTTTGACATACTTCTGGGGGAGTCAACGATTGCAAATTCTTCAGCCCCTATTGTGTTTGGGTGTAGCGTATATCAGTATGGGGATTTGACTCGGGCAACCAAAGCACTTGATGGAATTTTTGGGTTTGGTCAAGGGGAGTTCTCAGTTATTTCACAATTGTCTTCTCGAGGAATCACACCTAAAGTATTCTCCCATTGTTTAAAAGGAGGGGAAAATGGAGGGGGTATCTTGGTTCTTGGTGAGATTCTGGAGCCCAGCATTGTTTATAGTCCACTTATTCCATCTCAGCCGCACTATACCTTAAATTTACAGAGTATTGCACTCAGCGGGCAATTTTTTGCAAGCCCCACCGTGTTTCCAATATCAAATGCAGGAGAAACTATCATTGACTCTGGAACAACTTTGGCTTACCTTGTGGAAGAAGTCTACGATTGGATTATCAGTGTGATAACTTCTGCTGTTTCTCAATCAGCCACTCCCACAATTTCGAGGGGTAACCAATGTTATCGAGTCTCTACTAGTATAGCAGAAATATTTCCTGTGGTCAGCTTTAATTTTGAGGGTACTGCATCCATGGTGGTGACACCTGAAGAATATCTTCAGTTTGACTCCATAGAACCAGCTTTATGGTGCATAGGTTTTCAGAAAGCTGAGGATGGAGTAAACATTTTAGGAGATCTTGTTTTGAAAGATAAGATCATTATCTACGACTTGGCTCGACAACGGATTGGATGGGCGAATTATGACTGTTCGTCGTCTGTAAATGTTTCTGTAACATCCGGGAAGGATGTGTTCATCAATGAAGGACAGCTGAGTTCCATTTTTGTTAATAACCCTGAGGGTTCTCTTGTCTTCATTATTTGTGCTAGCTGCATTCGCCTGGCCAATCTGTATTTTGAATGCTTGGTTGGGCTGCTTATCGCCAATCTGCGAAGAGCAAATGTTCCTGTGCCTGCATCTTACATCTGGCTTAATGCAGGCTCCTTTTCTGTGAGGTCGTCGTGCAGCTGCAACCCATAA 1578 46.26 MRLFFCLISALASVVVVLVTGTAATSPNHFPLYRAFPHFPTPHFHSLTARDRLRHSRVLRRLAGGIVNFSVKGSSDPFIGLYFTKVKLGNPEREFNVQIDTGSDILWVTCSPCDGCPQSSGLGVELNLFDATKSSSARVVPCSDPICAAIPTTTDQCLSQADHCGYTFHYRDRSGTSGFYVTDLMHFDILLGESTIANSSAPIVFGCSVYQYGDLTRATKALDGIFGFGQGEFSVISQLSSRGITPKVFSHCLKGGENGGGILVLGEILEPSIVYSPLIPSQPHYTLNLQSIALSGQFFASPTVFPISNAGETIIDSGTTLAYLVEEVYDWIISVITSAVSQSATPTISRGNQCYRVSTSIAEIFPVVSFNFEGTASMVVTPEEYLQFDSIEPALWCIGFQKAEDGVNILGDLVLKDKIIIYDLARQRIGWANYDCSSSVNVSVTSGKDVFINEGQLSSIFVNNPEGSLVFIICASCIRLANLYFECLVGLLIANLRRANVPVPASYIWLNAGSFSVRSSCSCNP 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23945312 23950257 + CaPI482276_04g009810.1 Cam04g0981 125059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g0981 525 FunFam Aspartic proteinase-like protein 2 268 443 - -
Cam04g0981 525 SUPERFAMILY Acid proteases 78 440 IPR021109 -
Cam04g0981 525 Gene3D Acid Proteases 66 267 IPR021109 -
Cam04g0981 525 PANTHER ASPARTYL PROTEASES 12 436 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cam04g0981 525 CDD pepsin_A_like_plant 82 436 IPR034161 -
Cam04g0981 525 PRINTS Pepsin (A1) aspartic protease family signature 313 324 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cam04g0981 525 PRINTS Pepsin (A1) aspartic protease family signature 408 423 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cam04g0981 525 PRINTS Pepsin (A1) aspartic protease family signature 88 108 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cam04g0981 525 Pfam Xylanase inhibitor N-terminal 82 266 IPR032861 -
Cam04g0981 525 Gene3D Acid Proteases 268 443 IPR021109 -
Cam04g0981 525 Pfam Xylanase inhibitor C-terminal 284 432 IPR032799 -
Cam04g0981 525 ProSiteProfiles Peptidase family A1 domain profile. 82 432 IPR033121 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0981 Cam-Chr4:23945312 Cam11g0975 Cam-Chr11:16300367 1.60E-77 dispersed
Cam10g1920 Cam-Chr10:33250459 Cam04g0981 Cam-Chr4:23945312 5.00E-164 wgd
Cam02g2248 Cam-Chr2:35095451 Cam04g0981 Cam-Chr4:23945312 1.70E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g0981 - - - 0.0