Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam04g1004 ATGGAAATGCCTGGAAGGAGGTCGGATTACTCGCTTTTAAGTCAAATTCCGGACGAGGAGGTTGGAACGGGAGCTTCCACTTCCTTTTACGACTCAATAGCAGCTGGCGGAAACGTTTACAAGGGGAGAACCGATAGAGTTTTTGATTGGGACGGGAGTGGTGATCACAGGTTAAACACGCAAGCGAATCGGATAGGGAACCTGTATTCATGGATTGGTTTGCAGAGGCATTCTAGTGGAAGCAGCTACGATGATAGCTCTCTCTCCAGTGATTACTACGCGCCGACGCTCTCAAACGCTGCAGCAAATGAGATCAATGCATTGGGATATATCAACGACGATGAATTCAGAGTGAAAACTTTGGCAAGTGGAGGTTCGTCAGGAAAGAGCTGGGCGCAGCAGACGGAAGAGAGTTATCAATTGCAGCAGGCTTTGGCTCTCAGGCTTTCTTCAGAGGCTACTTGTGCCGATGATCCCAACTTTATGGATCCGATGCCAGACGAGGCAGCTTTAAGATCGTTGTCGAGTTCAGCTGAGGCCACCTCGCATCGATTCTGGGTAAATGGATGCATGTCATATTTTGAGAAAGTGCCTGATGGTTTTTATCTAATTCATGGGATGGACCCCTATGTATGGTCATTATGCACCAATCTGCAAGAGGATGGCCGTATACCATCATTTGAATCTCTGAAGACAGTTGATTCCAGTGCTGGTTCATCAATTGAAGTAGTTTTGATAGATCGGCATAGTGATGCTAGCTTAAAGGAACTGCAAAACAGGGTGCATCATATTTCTTCTAGTTGTATAACCACAAAAGAGGTTGCAGATCATTTAGCAAAGCTGGTATGCAATCACTTGGGGGGTTCGGTTTCTGAGGGAGAAGATGACTTGGTTTCTTCCTGGAGGGAGTGCAGTGATGACTTAAAAGAATGTTTGGGATCTGCTGTGATTCCCTTATGCAGCTTATCTGTTGGCCTTTGCAGACATCGTGCTCTTTTATTCAAAGTGTTAGCTGATTCTATAGATTTGCCCTGTCGAATTGCTAGGGGCTGTAAATATTGCACTAGAGACGATGCTTCATCTTGCCTTGTTAGGTTCGGGCTTGATAGGGAATATCTCATTGATCTGATTGGGAAGCCAGGTTGCTTATGCGAACCTGATTCTTTGCTCAATGGTCCATCATCCATCTCAATTTCTTCACCATTGCGATTTCCAAGACTAAAACCTATTGAATCTACCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTTGGATAGCCAATCACTTAATATTGTATTTGATGAAGCTTCTTCAGGGAATGTTGTATCTGGGAAGGATGCTGCGTTCTCTGTCTATCAAAGGCCATTAAATAGGAAGGATGGGGATGGAAAAAACATAGTGCTTACTGGTGACAGGGACAGAAGTTCTCAGTTATTGAATCCAAAATCTGCCCAACTGAATACTCAAGATGGAAAGTCTGAGCAATTTAGATCATGTATTACTTCTCAATCTACTGTACAGTCTACCCCTTTTGTAGACAACGTAGTCCCTTTAAACCATATCTCACAGATTGGTTCCAGAGATTCTGAGCCTCTCTTAGCATTGTCTCATGTAAGGGTGGATCATGCTAACAATTTATCATTTATTGACGGTAGTCAACTGATTAGAAAACCAAATGAGCTTTCCTTTGGCATAGAGGATTTGGTTATTCCATGGAAAGATCTTGTTTTGAGGGAGAAAATTGGGGCAGGTTCTTTTGGGACTGTATATCATGCTGATTGGCACGGCTCAGATGTTGCTGTGAAGATTCTGATGGAACAAGACCTACATGCAGAACGTTTTGATGAATTTCTTAGGGAGGTTGCCATAATGAAATGTCTACGACACCCGAATATTGTTCTCTTTATGGGTGCAGTCACAGAGCCTCCAAACTTGTCCATTGTCACAGAATACTTATCAAGGGGTAGTTTGCACAGGCTTTTGCATAGGCCTGGGGCAAGAGAAGTCTTAGATGAGAGACGACGGTTAAACATGGCATATGATGTTGCAAAGGGAATGAATTATCTTCACAAACGCAACCCCCCAATTGTTCATCGTGATTTGAAATCTCCAAATCTTTTAGTTGATAAGAAGTACACAGTAAAGGTTTGTGATTTTGGGCTTTCACGTTTAAAGGCGCACACGTTTCTTTCGTCAAAATCAGCTGCCGGGACTCCTGAGTGGATGGCACCAGAAGTTCTCCGTGATGAGCCATCAAATGAGAAATCGGATGTTTATAGCTTTGGTGTGATTCTGTGGGAGCTTGCTACGTTGCAGCAACCATGGGGCAACTTGAACCCAGCGCAGGTTGTGGCAGCCGTAGGTTTCAAAGGCAAAAGGCTTGAGATCCCACGTGATTTAAATCCTCAAGTTGCTACTATTATAGAGGCTTGCTTTGCCAGTGAGCCCTGGAAACGTCCTTCCTTTTATGAAATAATGGAATCGTTGAAGCCATTGATCAAACCTGCTACGCCTCATCAAATTCGCTCAAACATGTCATTAATAGATTCAGATTCATTCATGTATATTAATTTCTTCGCTGAAAGTGCCTCCATTTTTGAGGTAAACCAAGGAACTGCCTTCAGTTTTGTTGACGCCCATGTTTTCTCTTTACCACCAAAATATACGTATACCCTCTCCAGCTGGTCAAAGTTTTGGGCCGATAGATTTGGTCAGTGCAAATTGTTAGGTAGTCTTGCTAGCATCATCACCCAAGGTCCAAGTAAGGCCGAAGTTGGGGCCAATGTGAATAGTCAAATTGCTTCCTTCATAGGCTCAACAGATAAGCTCATCTCTGGTTCCCTTTTTCCAAGTACTCATCCAGAACACCTCTTATTGGTCTACCTCATCTCCTAG 2898 43.44 MEMPGRRSDYSLLSQIPDEEVGTGASTSFYDSIAAGGNVYKGRTDRVFDWDGSGDHRLNTQANRIGNLYSWIGLQRHSSGSSYDDSSLSSDYYAPTLSNAAANEINALGYINDDEFRVKTLASGGSSGKSWAQQTEESYQLQQALALRLSSEATCADDPNFMDPMPDEAALRSLSSSAEATSHRFWVNGCMSYFEKVPDGFYLIHGMDPYVWSLCTNLQEDGRIPSFESLKTVDSSAGSSIEVVLIDRHSDASLKELQNRVHHISSSCITTKEVADHLAKLVCNHLGGSVSEGEDDLVSSWRECSDDLKECLGSAVIPLCSLSVGLCRHRALLFKVLADSIDLPCRIARGCKYCTRDDASSCLVRFGLDREYLIDLIGKPGCLCEPDSLLNGPSSISISSPLRFPRLKPIESTIDFRSLAKQYFLDSQSLNIVFDEASSGNVVSGKDAAFSVYQRPLNRKDGDGKNIVLTGDRDRSSQLLNPKSAQLNTQDGKSEQFRSCITSQSTVQSTPFVDNVVPLNHISQIGSRDSEPLLALSHVRVDHANNLSFIDGSQLIRKPNELSFGIEDLVIPWKDLVLREKIGAGSFGTVYHADWHGSDVAVKILMEQDLHAERFDEFLREVAIMKCLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLHRLLHRPGAREVLDERRRLNMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKAHTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKGKRLEIPRDLNPQVATIIEACFASEPWKRPSFYEIMESLKPLIKPATPHQIRSNMSLIDSDSFMYINFFAESASIFEVNQGTAFSFVDAHVFSLPPKYTYTLSSWSKFWADRFGQCKLLGSLASIITQGPSKAEVGANVNSQIASFIGSTDKLISGSLFPSTHPEHLLLVYLIS 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24214167 24225641 + CaPI482276_04g010040.1 Cam04g1004 125082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam04g1004 965 FunFam Serine/threonine-protein kinase CTR1 655 840 - -
Cam04g1004 965 Pfam Ethylene-responsive protein kinase Le-CTR1 178 384 - -
Cam04g1004 965 Gene3D Phosphorylase Kinase; domain 1 569 654 - -
Cam04g1004 965 ProSiteProfiles Protein kinase domain profile. 576 834 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1004 965 SMART serkin_6 576 834 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam04g1004 965 ProSitePatterns Protein kinases ATP-binding region signature. 582 603 IPR017441 GO:0005524(InterPro)
Cam04g1004 965 FunFam Serine/threonine-protein kinase isoform 1 567 654 - -
Cam04g1004 965 Gene3D Transferase(Phosphotransferase) domain 1 655 844 - -
Cam04g1004 965 Pfam Protein tyrosine and serine/threonine kinase 577 830 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1004 965 PANTHER SERINE-THREONINE PROTEIN KINASE 170 833 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cam04g1004 965 PRINTS Tyrosine kinase catalytic domain signature 650 663 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1004 965 PRINTS Tyrosine kinase catalytic domain signature 691 709 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1004 965 PRINTS Tyrosine kinase catalytic domain signature 801 823 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1004 965 PRINTS Tyrosine kinase catalytic domain signature 738 748 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1004 965 PRINTS Tyrosine kinase catalytic domain signature 757 779 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1004 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam04g1004 965 SUPERFAMILY Protein kinase-like (PK-like) 554 830 IPR011009 -
Cam04g1004 965 CDD STKc_MAP3K-like 582 830 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1004 Cam-Chr4:24214167 Cam11g1485 Cam-Chr11:27592838 1.10E-172 dispersed
Cam03g1644 Cam-Chr3:31524813 Cam04g1004 Cam-Chr4:24214167 9.30E-127 transposed
Cam06g0449 Cam-Chr6:6628978 Cam04g1004 Cam-Chr4:24214167 5.00E-91 transposed
Cam10g1900 Cam-Chr10:33075448 Cam04g1004 Cam-Chr4:24214167 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85128 PF07714 PK_Tyr_Ser-Thr 5.20E-69 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam04g1004 K14510 - csv:101208800 1578.92